| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4561542 | 101 (1.240) | 7 (0.100) | 3/86 | NT | 6.9% | intergenic (‑540/‑133) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein |
| ? | W3110S.gb | = 4561549 | 101 (1.410) | intergenic (‑547/‑126) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein | |||||
Only 100 of 151 total aligned reads displayed.
ATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAA > W3110S.gb/4561473‑4561612 | tCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAt > 1:6983105/1‑71 (MQ=255) aTGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAtt < 1:2487127/70‑1 (MQ=255) aTGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAtt < 1:4129869/70‑1 (MQ=255) aTGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTc < 1:5494090/71‑1 (MQ=255) aTGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTc < 1:1283134/71‑1 (MQ=255) tttttCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGGTGACAGGATTCAGGcct < 1:2311823‑M2/71‑4 (MQ=255) tttttCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGcct < 1:7564326‑M2/71‑4 (MQ=255) tttttCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGcct < 1:2280357‑M2/71‑4 (MQ=255) ttttCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGcctg < 1:3570305‑M2/71‑5 (MQ=255) cTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGtct > 1:2207089/1‑69 (MQ=255) aaaaGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGa < 1:4473089/70‑1 (MQ=255) aaaaGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTAACAGGATTCAGGCCTGTCTCAGa > 1:7547057/1‑70 (MQ=255) aaaaGTCAGTAGATATTAATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGAc > 1:5413611/1‑71 (MQ=255) aaGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACt > 1:875914/1‑70 (MQ=255) aaGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTg < 1:6347668/71‑1 (MQ=255) aGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGTTTCAGGCCTGTCTCAGACTGa < 1:7004494/71‑1 (MQ=255) cAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa > 1:7534671/1‑62 (MQ=255) aGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAtt < 1:2759822/48‑1 (MQ=255) tAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCa > 1:5478253/1‑48 (MQ=255) tatTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGcctgaatcctgt > 1:2864674‑M1/1‑39 (MQ=255) tatTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:4259157/55‑1 (MQ=255) atTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTaa > 1:5292962/1‑71 (MQ=255) ttCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:2882402/53‑1 (MQ=255) ttCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:5015929/53‑1 (MQ=255) ttCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:5914549/53‑1 (MQ=255) ttCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGa > 1:7494471/1‑55 (MQ=255) ttCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAAt < 1:3860420/71‑1 (MQ=255) ttCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAAt < 1:3778801/71‑1 (MQ=255) tCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAt < 1:1877658/38‑1 (MQ=255) cATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGa > 1:7573602/1‑57 (MQ=255) cATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATg > 1:1584380/1‑70 (MQ=255) aTAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGaa > 1:857523/1‑71 (MQ=255) tAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:7872975/49‑1 (MQ=255) tAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:1978864/49‑1 (MQ=255) tAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGaa > 1:3889114/1‑70 (MQ=255) ggCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACaa < 1:1561254/71‑1 (MQ=255) aaGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAg > 1:473724/1‑71 (MQ=255) aaGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAg > 1:483118/1‑71 (MQ=255) aGTATGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACaa < 1:3100871/67‑1 (MQ=255) aGTAAGGTTTTATACTTTGCTGACAGGcctgaatcctg < 1:2055406‑M1/38‑12 (MQ=255) aGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAgg < 1:6445044/71‑1 (MQ=255) gTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAgg > 1:3227503/1‑70 (MQ=255) tAAGGTTTTATACTTTGCTGACAGGcctgaatcctgtc > 1:2482856‑M1/1‑25 (MQ=255) tAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:2926394/41‑1 (MQ=255) tAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAg > 1:163381/1‑68 (MQ=255) tAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGa < 1:7131331/71‑1 (MQ=255) aGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGAc > 1:5640155/1‑46 (MQ=255) aGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGAc > 1:2679166/1‑46 (MQ=255) aGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAAt > 1:7132737/1‑71 (MQ=255) aGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAAt > 1:1125534/1‑71 (MQ=255) tttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGaa > 1:7885137/1‑56 (MQ=255) tttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGaa > 1:5650556/1‑56 (MQ=255) tttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGaa > 1:5331179/1‑56 (MQ=255) tttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGc > 1:4004463/1‑70 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATg < 1:6740046/53‑1 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATg < 1:7073883/53‑1 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATg < 1:6358341/53‑1 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACaaaa > 1:4628147/1‑60 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGc > 1:4150137/1‑69 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCt < 1:4934880/70‑1 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTa > 1:1321193/1‑71 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTa > 1:7308986/1‑71 (MQ=255) ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTa > 1:6746849/1‑71 (MQ=255) tataCTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTAt > 1:6108041/1‑71 (MQ=255) ataCTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAAc > 1:5430569/1‑54 (MQ=255) cTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATTAACaaaa > 1:1868664/1‑55 (MQ=255) cTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACaaaa > 1:5123217/1‑55 (MQ=255) cTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACaaaa > 1:2495035/1‑55 (MQ=255) cTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGa < 1:2213946/70‑1 (MQ=255) cTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGa < 1:4859577/70‑1 (MQ=255) tttGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGa < 1:4445002/40‑1 (MQ=255) tttGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGa > 1:1441029/1‑48 (MQ=255) tttGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGaa > 1:2449009/1‑70 (MQ=255) tGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGaaaa > 1:1305352/1‑70 (MQ=255) tGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAAt > 1:646462/1‑71 (MQ=255) gCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTaa > 1:2714158/1‑42 (MQ=255) gCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGa > 1:5712872/1‑55 (MQ=255) gCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAAt > 1:6544559/1‑70 (MQ=255) gCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAAt < 1:5062093/70‑1 (MQ=255) gACAGTATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAggg < 1:3250754/51‑1 (MQ=255) gACAGGATTCAGGcctgtcagcaaagtataaaacctta > 1:6516112‑M2/1‑13 (MQ=255) gACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAggg < 1:6600056/51‑1 (MQ=255) gACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAggg < 1:6653754/51‑1 (MQ=255) gACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCt < 1:2978612/58‑1 (MQ=255) aCAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCa > 1:4267224/1‑71 (MQ=255) cAGGcctgaatcctgtcagcaaagtataaaaccttacttgcctatgaatatctactgacttttcaggaaaa < 1:3570305‑M1/71‑68 (MQ=255) cAGGATTCAGGcctgtcagcaaagtataaaaccttact < 1:5484868‑M2/38‑28 (MQ=255) cAGGATTCAGGcctgtcagcaaagtataaaaccttact < 1:7537235‑M2/38‑28 (MQ=255) cAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCAt > 1:4576908/1‑71 (MQ=255) cAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCAt > 1:6035223/1‑71 (MQ=255) cAGGATTAAGGcctgtcagcaaagtataaaaccttact < 1:967254‑M2/38‑28 (MQ=255) aGGcctgaatcctgtcagcaaagtataaaaccttacttgcctatgaatatctactgacttttcaggaaaaa < 1:2280357‑M1/71‑69 (MQ=255) aGGcctgaatcctgtcaccaaagtataaaaccttacttgcctatgaatatctactgacttttcaggaaaaa < 1:2311823‑M1/71‑69 (MQ=255) aGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAAt < 1:3351121/51‑1 (MQ=255) aGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCAt > 1:7082410/1‑70 (MQ=255) aGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATc < 1:1186944/71‑1 (MQ=255) ggcctgaatcctgtcagcaaagtataaaaccttacttgcctatgaatatctactgacttttcaggaaaa > 1:7378111‑M1/1‑2 (MQ=255) ggATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACaaaa > 1:5483652/1‑44 (MQ=255) ggATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACaaaa > 1:3298613/1‑44 (MQ=255) gcctgaatcctgtcagcaaagtataaaaccttacttgcctatgaatatctactgacttttcaggaaaaaag < 1:1300733‑M1/71‑71 (MQ=255) | ATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAA > W3110S.gb/4561473‑4561612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |