| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4738 = | 85 (1.040) | 7 (0.100) | 4/86 | NT | 9.2% | coding (1005/1287 nt) | thrC | threonine synthase |
| ? | W3110S.gb | 4758 = | 63 (0.880) | coding (1025/1287 nt) | thrC | threonine synthase | |||||
Only 100 of 105 total aligned reads displayed.
AAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAGTTG > W3110S.gb/4689‑4828 | taagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAg < 1:4417805‑M1/22‑1 (MQ=255)taagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAg < 1:3444095‑M1/22‑1 (MQ=255)aaaTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAg > 1:901148/1‑71 (MQ=255)aaaTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAg > 1:7794607/1‑71 (MQ=255) agctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAGtt > 1:2950801‑M1/48‑71 (MQ=255) agctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAGtt > 1:2941431‑M1/48‑71 (MQ=255) aTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGt > 1:1603402/1‑70 (MQ=255) gCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTa < 1:2969641/67‑1 (MQ=255) gCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAg < 1:5274147/71‑1 (MQ=255) aCTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAAc > 1:2850292/1‑71 (MQ=255) aCTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAAc < 1:1205637/71‑1 (MQ=255) aCTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAAc > 1:5637213/1‑71 (MQ=255) cTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACt > 1:3338878/1‑71 (MQ=255) cTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACt < 1:4556294/71‑1 (MQ=255) tGAAAGAGCTTGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTaaaa < 1:1241691/65‑1 (MQ=255) tGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTaaaa < 1:6474161/65‑1 (MQ=255) tGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTg > 1:7420747/1‑71 (MQ=255) gAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:751247/1‑71 (MQ=255) gAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:3305765/1‑71 (MQ=255) aaaGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTg < 1:354959/69‑1 (MQ=255) agagCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGc > 1:5777462/1‑70 (MQ=255) cTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTacac > 1:5120562/1‑71 (MQ=255) tGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTa < 1:4317072/53‑1 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:6514309/1‑61 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:3952059/1‑61 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACtt < 1:4648990/70‑1 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACt < 1:1849453/69‑1 (MQ=255) ggTTATGCAGCCGTGGATGATGAAAACACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTc > 1:3005463/1‑71 (MQ=255) gaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGa < 1:4103605‑M1/21‑1 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTa > 1:2823575/1‑64 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTa > 1:522609/1‑64 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTa > 1:5955199/1‑64 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCg > 1:2754915/1‑71 (MQ=255) ttATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCgg < 1:7765933/71‑1 (MQ=255) ttATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCgg < 1:6708780/71‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAg < 1:2845623/51‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAg < 1:7904570/51‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGc < 1:3626817/59‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAg > 1:4103289/1‑71 (MQ=255) cAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCg > 1:4528909/1‑71 (MQ=255) cAGCCGTGGATGATGAAACCACGCAAAAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCg > 1:6120595/1‑71 (MQ=255) aGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTa < 1:1492229/57‑1 (MQ=255) aGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTc > 1:1855200/1‑63 (MQ=255) gCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCa < 1:6545213/71‑1 (MQ=255) gCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCa < 1:323869/71‑1 (MQ=255) ccGTGGATTATGAAACCACGCAACAGACAATGCGTTAGTTAAAAGAACTGGGCTACACtt < 1:3555764/60‑1 (MQ=255) ccGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGa < 1:2441333/64‑1 (MQ=255) ccGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGa < 1:900050/64‑1 (MQ=255) gTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGc > 1:3868576/1‑71 (MQ=255) gTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGc > 1:1506679/1‑71 (MQ=255) gTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGc > 1:239853/1‑71 (MQ=255) gTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGc > 1:1565548/1‑71 (MQ=255) tGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTc > 1:2852162/1‑58 (MQ=255) ggATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTg > 1:3411172/1‑71 (MQ=255) gatgatGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGc > 1:3061980/1‑71 (MQ=255) atgatgAAACCACGCAACAGACAATGCGTGAGTTAAAAGa < 1:3788184/40‑1 (MQ=255) atgatgAAACCACGCAACAGACAATGCGTGAGTTAAAAGa < 1:7160459/40‑1 (MQ=255) tgatgaAACCACGCAACAGACAATGCGTGAGTTAAAAGaa < 1:3543707/40‑1 (MQ=255) tgatgaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCg < 1:6375859/71‑1 (MQ=255) tgatgaAACCACCCAACAGACAATGCGTGAGTTAAAAGaa < 1:2989099/40‑1 (MQ=255) gatgaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCg > 1:4048344/1‑70 (MQ=255) gatgaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCg > 1:581685/1‑70 (MQ=255) tgaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAg > 1:790989/1‑71 (MQ=255) gaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGt > 1:2756902/1‑68 (MQ=255) aactcacgcattgtctgttgcgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCt > 1:2950801‑M2/25‑71 (MQ=255) aactcacgcattgtctgttgcgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCt > 1:2941431‑M2/25‑71 (MQ=255) ctcacgcattgtctgttgcgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTa < 1:4417805‑M2/49‑1 (MQ=255) ctcacgcattgtctgttgcgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTa < 1:3444095‑M2/49‑1 (MQ=255) aCCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTa > 1:2494480/1‑71 (MQ=255) tcacgcattgtctgttgcgtgAGTTAAAAGAACTGGGGTACACTTc < 1:2530876‑M2/25‑1 (MQ=255) tcacgcattgtctgttgcgtgAGTTAAAAGAACTGGGCTACACTTc < 1:4103605‑M2/25‑1 (MQ=255) ccACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTAt < 1:7739825/71‑1 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:1168117‑M1/1‑35 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:7426975‑M1/1‑35 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:6484001‑M1/1‑35 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:5524757‑M1/1‑35 (MQ=255) ACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCtt > 1:1183326‑M1/1‑67 (MQ=255) CGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGt > 1:1586047‑M1/1‑71 (MQ=255) GCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCg > 1:4032433‑M1/1‑43 (MQ=255) GCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTg < 1:1713461‑M1/71‑1 (MQ=255) GCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTg < 1:1723278‑M1/71‑1 (MQ=255) GCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTg > 1:7358900‑M1/1‑71 (MQ=255) AACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGc > 1:3575863‑M1/1‑61 (MQ=255) ttgtctgttgcgtgAGTTAAAAGAACTGGGCTACACt < 1:5295568‑M2/23‑1 (MQ=255) aCAGACAATGCGTTAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTAt > 1:2245487/1‑64 (MQ=255) aCAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTAt > 1:3114220/1‑64 (MQ=255) aCAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTgcgc > 1:6839943/1‑71 (MQ=255) gACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGc < 1:3421365/71‑1 (MQ=255) aaTGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGGTGCGTg < 1:1027140/71‑1 (MQ=255) aaTGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGt > 1:4837403/1‑70 (MQ=255) aaTGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGt > 1:5189075/1‑70 (MQ=255) tgcgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGAt > 1:2253983‑M2/7‑71 (MQ=255) cgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCa < 1:4737648‑M2/67‑1 (MQ=255) cgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCa < 1:5707058‑M2/67‑1 (MQ=255) gtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAg > 1:5227493‑M2/4‑71 (MQ=255) tgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGc < 1:7166610‑M2/46‑1 (MQ=255) gAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGc < 1:2352590‑M2/60‑1 (MQ=255) aGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTTATCAGTTg < 1:7024137/71‑1 (MQ=255) aGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAGtt > 1:6354994/1‑70 (MQ=255) aGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAGtt > 1:2761654/1‑70 (MQ=255) | AAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAGTTG > W3110S.gb/4689‑4828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |