| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 18686 = | 45 (0.550) | 4 (0.060) | 3/86 | NT | 8.6% | intergenic (+31/‑29) | nhaA/nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator |
| ? | W3110S.gb | 18711 = | 45 (0.630) | intergenic (+56/‑4) | nhaA/nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator | |||||
CCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCG > W3110S.gb/18644‑18781 | taatacaagtggttgtaattgatatgagacatgctcatttctCTCCCTTTTCATTGTTATCAGGgagag > 1:4532205‑M1/43‑69 (MQ=255)ccATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGgagaga > 1:5173628/1‑70 (MQ=255)ccATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGgagaga > 1:6887901/1‑70 (MQ=255) aGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAg < 1:4082343/71‑1 (MQ=255) gtggttgtaattgatatgagacatgctcatttctCTCCCTTTTCATTGTTATCAGGgagaga < 1:3230581‑M1/28‑1 (MQ=255) gtggttgtaattgatatgagacatgctcatttctCTCCCTTTTCATTGTTATCAGGgaga > 1:694576‑M1/35‑60 (MQ=255) gtggttgtaattgatatgagacatgctcatttctCTCCCTTTTCATTGTTATCAGGGAGAGaa < 1:5334644‑M1/29‑1 (MQ=255) aGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAAt > 1:3110742/1‑60 (MQ=255) tttACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCaa < 1:2088537/71‑1 (MQ=255) tttACCGGGGAGCCATAAACGGCTCCCTTTTCATTGATATCAGGGAGAGAAATGAGc > 1:1318960/1‑57 (MQ=255) ttACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCaa > 1:2131567/1‑70 (MQ=255) ttACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAAt > 1:6145881/1‑71 (MQ=255) aCCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAAtt < 1:7132575/70‑1 (MQ=255) ccGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTAc < 1:5276381/71‑1 (MQ=255) ccGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGAATGTCTCATATCAATTa > 1:2458508/1‑70 (MQ=255) cGGGGAGCCTTAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGc < 1:5110249/52‑1 (MQ=255) gggAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCa > 1:5201258/1‑63 (MQ=255) cATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAAt < 1:4800838/59‑1 (MQ=255) cATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTg < 1:3118450/71‑1 (MQ=255) aTAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTg > 1:3119702/1‑70 (MQ=255) tAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGt > 1:7391297/1‑70 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGc < 1:6959211/41‑1 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGc < 1:4631861/41‑1 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGc < 1:336851/41‑1 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAAc > 1:5252642/1‑62 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTa > 1:1495781/1‑70 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTAt > 1:6030343/1‑71 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTAt > 1:2421135/1‑71 (MQ=255) aaaCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTAt > 1:6411511/1‑71 (MQ=255) ttctctccctgataacaatgaaaagggagAGAAATGAGCATGTCTCATATCAATTACAACCAc < 1:5334644‑M2/34‑1 (MQ=255) aCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTa > 1:6549192/1‑56 (MQ=255) aCGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTa > 1:3981127/1‑71 (MQ=255) tctctccctgataacaatgaaaagggagAGAAATGAGCATGTCTCATATCAATTACAACCAc < 1:3230581‑M2/34‑1 (MQ=255) cGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCata > 1:2358891/1‑48 (MQ=255) cGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCata > 1:2485682/1‑48 (MQ=255) ggCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACt < 1:1417300/62‑1 (MQ=255) ggCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACt < 1:3137095/62‑1 (MQ=255) ggCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTAt > 1:7232724/1‑67 (MQ=255) ggCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACt < 1:3987605/71‑1 (MQ=255) ctctccctgataacaatgaaaagggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTa > 1:4532205‑M2/28‑69 (MQ=255) tctccctgataacaatgaaaagggagAGAAATGAGCATGTCTCATATCAATTACAACCAc > 1:694576‑M2/27‑60 (MQ=255) gCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCa > 1:7859483/1‑37 (MQ=255) CTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAAtt < 1:7662225‑M1/51‑1 (MQ=255) TCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCAc > 1:3742108‑M1/1‑58 (MQ=255) TCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCAc > 1:7364589‑M1/1‑58 (MQ=255) CCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAAt < 1:2799372‑M1/48‑1 (MQ=255) CCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAAt < 1:2250159‑M1/48‑1 (MQ=255) CCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTg < 1:1829074‑M1/71‑1 (MQ=255) CCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTg < 1:7856391‑M1/71‑1 (MQ=255) CCCTTTTCATTGTTATAAGGGAGAGAAATGAGCATGTCTCATATCAAt < 1:3759773‑M1/48‑1 (MQ=255) CCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAAtt < 1:1610125‑M1/48‑1 (MQ=255) CCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACaa < 1:132947‑M1/52‑1 (MQ=255) CCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTgg < 1:5039322‑M1/71‑1 (MQ=255) TTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCa > 1:6964531‑M1/1‑43 (MQ=255) TTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTc < 1:1299242‑M1/66‑1 (MQ=255) TTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCa < 1:7327491‑M1/71‑1 (MQ=255) tttCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCa > 1:215607/1‑70 (MQ=255) tttCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCAt > 1:6414435/1‑71 (MQ=255) tttCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCAt > 1:7255974/1‑71 (MQ=255) ttCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGc < 1:5150004/68‑1 (MQ=255) ttCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCAt < 1:6834966/70‑1 (MQ=255) tCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACaa > 1:4848064/1‑47 (MQ=255) tCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACaa > 1:5391761/1‑47 (MQ=255) tCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAAc > 1:2934285/1‑48 (MQ=255) cATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCAt > 1:4633653/1‑68 (MQ=255) cATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCAt > 1:2453692/1‑68 (MQ=255) gTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACtt > 1:5684163/1‑57 (MQ=255) gTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACtt > 1:346455/1‑57 (MQ=255) gTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCtat > 1:5435180/1‑70 (MQ=255) aTCAGGGAGAGAAATGAGCATGTCTCATATCAATTACa < 1:5515692/38‑1 (MQ=255) aTCAGGGAGAGAAATGAGCATGTCTCATATCAATTACa < 1:3541567/38‑1 (MQ=255) aTCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATaaa < 1:7535138/70‑1 (MQ=255) aTCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATaaa < 1:4536859/70‑1 (MQ=255) tCAGGGAGAGAAATGAGCATGTCTCATATCAATTACa < 1:1483193/37‑1 (MQ=255) tCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAaag < 1:7109024/70‑1 (MQ=255) tCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAaag < 1:6729317/70‑1 (MQ=255) cAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAaag < 1:4922674/69‑1 (MQ=255) agggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTg < 1:2341956‑M2/48‑1 (MQ=255) agggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTg < 1:1573370‑M2/48‑1 (MQ=255) agggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTg < 1:5220100‑M2/48‑1 (MQ=255) gggagAGAAATGAGCATGTCTCATATCAATTACAACCACtt < 1:3138314‑M2/36‑1 (MQ=255) ggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATaaa < 1:7035698‑M2/61‑1 (MQ=255) ggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATaaa < 1:2142663‑M2/61‑1 (MQ=255) ggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATaaa < 1:1018076‑M2/61‑1 (MQ=255) gagAGAAATGAGCATTTCTCATATCAATTACAACCACTTGTATTACtt < 1:5394314‑M2/45‑1 (MQ=255) gagAGAAATGAGCATGTCTCATATCAATTACAACCACtt > 1:2989305‑M2/4‑39 (MQ=255) gagAGAAATGAGCATGTCTCATATCAATTACAACCACtt > 1:5821421‑M2/4‑39 (MQ=255) agAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCt > 1:1705391‑M2/3‑49 (MQ=255) agAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAaaga > 1:5492858‑M2/3‑65 (MQ=255) agAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTc > 1:1887984‑M2/3‑71 (MQ=255) agaAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCt < 1:452489/47‑1 (MQ=255) agaAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGt < 1:3257627/67‑1 (MQ=255) agaAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCg > 1:3367980/1‑71 (MQ=255) | CCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTCCG > W3110S.gb/18644‑18781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |