| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 567451 = | 126 (1.550) | 11 (0.150) | 7/88 | NT | 9.9% | coding (167/186 nt) | renD | hypothetical protein |
| ? | W3110S.gb | 567473 = | 86 (1.180) | intergenic (+3/‑65) | renD/emrE | hypothetical protein/multidrug resistance protein | |||||
Only 100 of 149 total aligned reads displayed.
TCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAAC > W3110S.gb/567404‑567543 | tCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAAtgatga < 1:423977/70‑1 (MQ=255)tCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAAtgatga > 1:6328708/1‑70 (MQ=255)tCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAAtgatga > 1:6031529/1‑70 (MQ=255)tCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAAtgatga > 1:7876251/1‑70 (MQ=255)tCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGaa < 1:1193854/71‑1 (MQ=255)tCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGaa > 1:1412721/1‑71 (MQ=255)tCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGaa < 1:7689365/71‑1 (MQ=255) gCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGaaa > 1:4489654/1‑70 (MQ=255) ccAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACa < 1:1408582/71‑1 (MQ=255) cAGAGTGCCGCGATGAAACGGGTATTGAGGGTTTATAAAAGAACATCAATGGGAACACAATGATGAAACAg < 1:2220789/71‑1 (MQ=255) cAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAg < 1:3681778/71‑1 (MQ=255) cAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAg < 1:6137127/71‑1 (MQ=255) cAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAg < 1:5100008/71‑1 (MQ=255) agagTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAgg < 1:2379241/71‑1 (MQ=255) agagTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAgg > 1:5270853/1‑71 (MQ=255) gagTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGt < 1:6073237/71‑1 (MQ=255) gagaattgtactacagtttgaactcaactcacctgttaCATCAATGGGAACACAATGATGAAAc < 1:1785370‑M1/26‑1 (MQ=255) ccGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAgg > 1:7783868/1‑65 (MQ=255) ccGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagtt < 1:2885236/71‑1 (MQ=255) ccGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagtt < 1:397739/71‑1 (MQ=255) gcgATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagttg < 1:4378632/70‑1 (MQ=255) cgATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagttgag > 1:7673877/1‑71 (MQ=255) cgATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagttgag > 1:7263424/1‑71 (MQ=255) aTGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACa > 1:7496551/1‑58 (MQ=255) aTGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTgagttgagtt > 1:2680678/1‑71 (MQ=255) aaaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCa < 1:4877172/70‑1 (MQ=255) aaaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCa > 1:3289288/1‑70 (MQ=255) aaaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCa < 1:3155979/70‑1 (MQ=255) aaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAAtgatga < 1:5338312/50‑1 (MQ=255) cGGGTAATGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGaaa > 1:3925916/1‑50 (MQ=255) gggTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagt > 1:6176302/1‑58 (MQ=255) gggTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTg < 1:1059304/71‑1 (MQ=255) gggTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTg < 1:3065815/71‑1 (MQ=255) gTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTg > 1:225645/1‑69 (MQ=255) aTTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagtt < 1:2645462/55‑1 (MQ=255) aTTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgtag > 1:6567523/1‑70 (MQ=255) ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagtt < 1:259165/54‑1 (MQ=255) ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagtt < 1:3913295/54‑1 (MQ=255) ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagtt < 1:3504768/54‑1 (MQ=255) ttGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgtagta > 1:1976390/1‑71 (MQ=255) gAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAAc > 1:6059144/1‑62 (MQ=255) gAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGACTTCAAACTGTAGTAc > 1:706484/1‑70 (MQ=255) aGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACaa < 1:5778656/71‑1 (MQ=255) aGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACaa < 1:6190120/71‑1 (MQ=255) aGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACaa < 1:4715944/71‑1 (MQ=255) ggTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAAtt < 1:2441885/71‑1 (MQ=255) gTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAAc < 1:2238073/58‑1 (MQ=255) gTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTg < 1:1848906/60‑1 (MQ=255) tataAAAGAACATCAATGGGACCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctct > 1:129361/1‑71 (MQ=255) tataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctct > 1:1685860/1‑71 (MQ=255) tataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctct > 1:4508194/1‑71 (MQ=255) ataAAAGAACATCAATGGGAACACAATGATGAAACAg > 1:4299839/1‑37 (MQ=255) ataAAAGAACATCAATGGGAACACAATGATGAAACAg > 1:5512782/1‑37 (MQ=255) ataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACt < 1:5128958/55‑1 (MQ=255) taAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagttga > 1:186994/1‑45 (MQ=255) taAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagttga > 1:6922400/1‑45 (MQ=255) taAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagttga > 1:2935815/1‑45 (MQ=255) taAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagttga > 1:3650247/1‑45 (MQ=255) taAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctctc > 1:7599584/1‑70 (MQ=255) acctgtttCATCATTGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctctc < 1:2335066‑M1/62‑1 (MQ=255) aaaaGAACATCAATGGGAACACAATGATGAAACAg < 1:4377311/35‑1 (MQ=255) aaaaGAACATCAATGGGAACACAATGATGAAACAGGtga < 1:5729289/39‑1 (MQ=255) aaaaGAACATCAATGGGAACACAATGATGAAACAGGtga < 1:6753654/39‑1 (MQ=255) aaaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTg > 1:2731907/1‑53 (MQ=255) aaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGt > 1:7041422/1‑71 (MQ=255) aaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGt > 1:6811733/1‑71 (MQ=255) aaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGt > 1:5800628/1‑71 (MQ=255) gtttcatcattgtgttcccattgatgTAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctc < 1:1785370‑M2/38‑1 (MQ=255) aaCATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCaaa > 1:4393858/1‑46 (MQ=255) aaCATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGttt > 1:5076172/1‑70 (MQ=255) aaCATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTg < 1:3495280/71‑1 (MQ=255) aCATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTg < 1:6016513/70‑1 (MQ=255) atcattgtgttcccattgatgAAACAGGTGAGTTGAGTTCAAACTgtag > 1:1604554‑M2/22‑49 (MQ=255) atcattgtgttcccattgatgAAACAGGTGAGTTGAGTTCAAACTgtag > 1:7605647‑M2/22‑49 (MQ=255) atcattgtgttcccattgatgAAACAGGTGAGTTGAGTTCAAACTgtag > 1:6225384‑M2/22‑49 (MQ=255) ATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGaa > 1:6249021‑M1/1‑70 (MQ=255) AATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGa > 1:3027900‑M1/1‑66 (MQ=255) AATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGa > 1:2072842‑M1/1‑66 (MQ=255) AATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAg > 1:5014431‑M1/1‑70 (MQ=255) aTGGGAACACAATGATGAAACAGGTgagttgagtt > 1:7431167/1‑35 (MQ=255) aTGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAgg > 1:3819340/1‑70 (MQ=255) tgtgttcccattgatgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAg < 1:2607128‑M2/43‑1 (MQ=255) tGGGAACACAATGATGAAACAGGTGAGTTGAGTTCa < 1:3252584/36‑1 (MQ=255) tGGGAACACAATGATGAAACAGGTGAGTTGAGTTCa < 1:7367517/36‑1 (MQ=255) tgttcccattgatgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGtt > 1:1268907‑M2/15‑59 (MQ=255) ggAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTAc < 1:7893813/45‑1 (MQ=255) ggAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAg < 1:5622596/71‑1 (MQ=255) acacAATGATGAAACAGGTGAGTTGAGTTCAAACt < 1:1975606/35‑1 (MQ=255) acacAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAat < 1:7746780/71‑1 (MQ=255) caATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATg > 1:1094244/1‑71 (MQ=255) tgatgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTa < 1:909543‑M2/66‑1 (MQ=255) tgatgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTa > 1:2266859‑M2/6‑71 (MQ=255) gatgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTAt > 1:5929232‑M2/5‑71 (MQ=255) atgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctctc > 1:872704‑M2/4‑43 (MQ=255) gAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGttt > 1:2592265‑M2/2‑47 (MQ=255) gAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGttt > 1:1083250‑M2/2‑47 (MQ=255) gAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTg > 1:5505278‑M2/2‑48 (MQ=255) gAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGaa > 1:330080‑M2/2‑50 (MQ=255) gAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGc < 1:1153930‑M2/64‑1 (MQ=255) aaaCAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAAc < 1:5542194/71‑1 (MQ=255) | TCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAAC > W3110S.gb/567404‑567543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |