| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1659087 = | 72 (0.880) | 7 (0.090) | 3/92 | NT | 8.5% | coding (85/711 nt) | ynfC | hypothetical protein |
| ? | W3110S.gb | 1659114 = | 84 (1.100) | coding (58/711 nt) | ynfC | hypothetical protein | |||||
Only 100 of 132 total aligned reads displayed.
CGCAGCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCA > W3110S.gb/1659044‑1659182 | gCAGCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCtttg < 1:5440405/71‑1 (MQ=255) gCAGCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCtgtg < 1:2753169/71‑1 (MQ=255) aGCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCg > 1:2876911/1‑71 (MQ=255) gCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCgg < 1:4183829/71‑1 (MQ=255) gCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCgg < 1:1338393/71‑1 (MQ=255) gCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCgg < 1:6372234/71‑1 (MQ=255) atgcttactcgcgatattcctcacaggatgtgaccgcaCAGGGGTAAATGAAAGTGTTACCTCtgt < 1:2208642‑M1/28‑1 (MQ=255) cAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACAt > 1:5220575/1‑71 (MQ=255) aaaTCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATcc > 1:7683245/1‑71 (MQ=255) tCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTTTTACCTCTGTGCGGTCACATCCtgt < 1:2268390/71‑1 (MQ=255) tCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCtgt > 1:3954788/1‑71 (MQ=255) ttCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAgg > 1:4515255/1‑70 (MQ=255) ttCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGa < 1:5023450/71‑1 (MQ=255) cATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGaa > 1:7938232/1‑70 (MQ=255) cATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGaa > 1:1604901/1‑70 (MQ=255) tAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAg > 1:7362375/1‑64 (MQ=255) tAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATc > 1:5837802/1‑71 (MQ=255) agagAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcg > 1:2011930/1‑71 (MQ=255) agaAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcgcg < 1:381223/71‑1 (MQ=255) agaAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcccg < 1:3393932/71‑1 (MQ=255) aaaCTGGCCATCTCAGGGGTAAATGAAAGTGTTACTTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAg > 1:2570082/1‑71 (MQ=255) aaCTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGt < 1:4252672/71‑1 (MQ=255) aCTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTa < 1:6890223/71‑1 (MQ=255) gCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcgcg < 1:4065940/63‑1 (MQ=255) gCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGc < 1:2944855/70‑1 (MQ=255) ccATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCAt < 1:3516663/71‑1 (MQ=255) aTCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACAt < 1:2510999/42‑1 (MQ=255) aTCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATgg > 1:1897842/1‑71 (MQ=255) aTCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATg > 1:6926748/1‑70 (MQ=255) aTCTAAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATgg > 1:285919/1‑71 (MQ=255) tctcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGa < 1:6263050/51‑1 (MQ=255) tctcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGc > 1:1756506/1‑66 (MQ=255) tctcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGc > 1:705862/1‑66 (MQ=255) tctcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGc > 1:4133699/1‑66 (MQ=255) tcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAg > 1:2023605/1‑47 (MQ=255) tcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGc > 1:3422117/1‑64 (MQ=255) tcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATgg > 1:6267621/1‑68 (MQ=255) tcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATgg > 1:1102153/1‑68 (MQ=255) tcAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATg > 1:2687031/1‑67 (MQ=255) acagaggtaacactttcatttacccctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCAt < 1:7928192‑M2/38‑1 (MQ=255) acagaggtaacactttcatttacccctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCAt < 1:2208642‑M2/38‑1 (MQ=255) CAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCAt < 1:2129196‑M1/65‑1 (MQ=255) AGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGgtagt < 1:6329027‑M1/70‑1 (MQ=255) gggTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAAt > 1:783512/1‑71 (MQ=255) aggtaacactttcatttacccctgTGCGGTCACATCCTGTGAGGa < 1:7094023‑M2/21‑1 (MQ=255) aggtaacactttcatttacccctgTGCGGTCACATCCTGTGAGGa < 1:2259986‑M2/21‑1 (MQ=255) aggtaacactttcatttacccctgTGCGGTCACATCCTGTGAGGa < 1:3776275‑M2/21‑1 (MQ=255) aggtaacactttcatttacccctgTGCGGTCACATCCTGTGAGGa < 1:6978656‑M2/21‑1 (MQ=255) gtaacactttcatttacccctgTGCGGTCACATCCTGTGAGGAat > 1:2127186‑M2/23‑45 (MQ=255) gTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAAttt < 1:5135921/71‑1 (MQ=255) gTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAAttt > 1:7627878/1‑71 (MQ=255) aaaTGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTg > 1:7295574/1‑70 (MQ=255) aaTGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcgc > 1:2319768/1‑47 (MQ=255) aaTGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcgc > 1:1870143/1‑47 (MQ=255) aaTGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTaa < 1:2742143/65‑1 (MQ=255) aaTGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTa > 1:1040650/1‑71 (MQ=255) aagAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTAt < 1:7093619/69‑1 (MQ=255) tGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGaa > 1:5663274/1‑39 (MQ=255) tGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAatat > 1:7494177/1‑42 (MQ=255) tGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcg < 1:968160/44‑1 (MQ=255) aaaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAAtt < 1:5460893/63‑1 (MQ=255) aaaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTc < 1:3826211/71‑1 (MQ=255) aaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGaa > 1:3687952/1‑36 (MQ=255) aaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTaa > 1:7474517/1‑48 (MQ=255) aaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTaa > 1:6813391/1‑48 (MQ=255) aaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTaa > 1:324570/1‑48 (MQ=255) aaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTaa > 1:1865855/1‑48 (MQ=255) aaGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTca > 1:7783958/1‑71 (MQ=255) aGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATcgcg > 1:7011972/1‑42 (MQ=255) aGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCa > 1:5663609/1‑50 (MQ=255) aGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCa > 1:652485/1‑50 (MQ=255) gtgtTACCTCTGTGCGGTCACATCCTGTGAGGAat < 1:7600126/35‑1 (MQ=255) gtgtTACCTCTGTGCGGTCACATCCTGTGAGGAat < 1:3994251/35‑1 (MQ=255) gtgtTACCTCTGTGCGGTCACATCCTGTGAGGAat < 1:3070865/35‑1 (MQ=255) gtgtTACCTCTGTGCGGTCACATCCTGTGAGGAat < 1:2219013/35‑1 (MQ=255) tgtTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaa < 1:1963425/71‑1 (MQ=255) ttACCTGTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaa > 1:1012403/1‑69 (MQ=255) ttACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaa > 1:299111/1‑69 (MQ=255) ttACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaa > 1:1067078/1‑69 (MQ=255) ttACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaa > 1:4009771/1‑69 (MQ=255) tACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAg < 1:6771175/43‑1 (MQ=255) tACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaa > 1:495832/1‑68 (MQ=255) tACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaa > 1:2089178/1‑68 (MQ=255) tACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAg > 1:5005046/1‑71 (MQ=255) aCCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAg < 1:2458793/70‑1 (MQ=255) ccTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCacaaca > 1:6642353/1‑68 (MQ=255) ccTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTc < 1:5783863/71‑1 (MQ=255) ttctGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAAt < 1:5995866/51‑1 (MQ=255) ctctGTGCGGTCACATCCTGTGAGGAATATCGCGAGt < 1:5469738/37‑1 (MQ=255) ctctGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGgtagt < 1:7241051/49‑1 (MQ=255) ctctGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGgtagt < 1:1409266/49‑1 (MQ=255) ctctGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAAt < 1:567618/52‑1 (MQ=255) tctGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCAc > 1:1672333/1‑71 (MQ=255) ctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGgta < 1:7449466‑M2/42‑1 (MQ=255) ctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTaa > 1:566269‑M2/4‑49 (MQ=255) ctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTca > 1:3593304‑M2/4‑60 (MQ=255) ctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTca > 1:1259139‑M2/4‑60 (MQ=255) ctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTca > 1:218849‑M2/4‑60 (MQ=255) tgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACTGt < 1:5247099‑M2/64‑1 (MQ=255) gTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTa > 1:7861189‑M2/2‑53 (MQ=255) | CGCAGCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCA > W3110S.gb/1659044‑1659182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |