| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2001716 = | 73 (0.900) | 7 (0.100) | 3/84 | NT | 10.3% | intergenic (‑99/+6) | yedO/fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit |
| ? | W3110S.gb | 2001741 = | 60 (0.860) | coding (782/801 nt) | fliY | cystine transporter subunit | |||||
Only 100 of 109 total aligned reads displayed.
TAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCA > W3110S.gb/2001673‑2001807 | taaataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCa < 1:4335442/71‑1 (MQ=255) aaataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCa > 1:6719734/1‑70 (MQ=255) aataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCaaa > 1:6054855/1‑71 (MQ=255) taaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAAcc < 1:2386972/71‑1 (MQ=255) taaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAAcc < 1:6368323/71‑1 (MQ=255) taaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAAc > 1:7448259/1‑70 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAt > 1:2729223/1‑71 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAt > 1:2916081/1‑71 (MQ=255) aaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtttt > 1:4121082/1‑71 (MQ=255) cgcTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAttt < 1:26921/66‑1 (MQ=255) gcTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGa < 1:2803295/71‑1 (MQ=255) tAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCa < 1:6578186/55‑1 (MQ=255) tAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGa > 1:7844282/1‑69 (MQ=255) aGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAg > 1:1334523/1‑71 (MQ=255) aGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAg > 1:5032008/1‑71 (MQ=255) gTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAgg < 1:4540114/71‑1 (MQ=255) gAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAttttt > 1:3261093/1‑61 (MQ=255) aGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTg < 1:1514750/71‑1 (MQ=255) gcCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCaa < 1:7367263/46‑1 (MQ=255) ctttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAg < 1:4536300/58‑1 (MQ=255) ccTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg < 1:5315467/55‑1 (MQ=255) cTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:6778816/1‑54 (MQ=255) cTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCa < 1:304756/67‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtttt < 1:5207619/50‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtttt < 1:6690591/50‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtt < 1:5519778/48‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg < 1:4964455/53‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:3400792/1‑53 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:6833534/1‑53 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:365637/1‑53 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTg > 1:7549575/1‑71 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTg > 1:4808518/1‑71 (MQ=255) tttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGc > 1:5684264/1‑71 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCaa > 1:1417832/1‑40 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGc < 1:4745846/59‑1 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:2028641/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:2198539/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:5463038/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:5453650/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:473553/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:1002193/1‑66 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:579576/1‑66 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:2841792/1‑66 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGc > 1:7227630/1‑70 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGc > 1:6648273/1‑70 (MQ=255) cATTATGCTGATTATTTGGTCACATCAGCACCAAACCAttt < 1:1229622/41‑1 (MQ=255) cATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGaaa > 1:2441476/1‑49 (MQ=255) cATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGaaa > 1:7886409/1‑49 (MQ=255) aTTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCtttt > 1:3445965/1‑71 (MQ=255) aTTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:6501744/70‑1 (MQ=255) aTTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:4515373/70‑1 (MQ=255) ttATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCa < 1:451703/56‑1 (MQ=255) tATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:5672588/1‑57 (MQ=255) gctgatgtgaccaaataatcagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCAt > 1:254423‑M2/25‑71 (MQ=255) CTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGATAGGGCTTg > 1:1795443‑M1/1‑49 (MQ=255) CTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTg > 1:5870365‑M1/1‑49 (MQ=255) CTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTg > 1:464954‑M1/1‑49 (MQ=255) CTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGcc < 1:1461892‑M1/58‑1 (MQ=255) GATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCtt < 1:4141469‑M1/46‑1 (MQ=255) ATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCAttt > 1:3074320‑M1/1‑69 (MQ=255) ATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCAttt > 1:7701849‑M1/1‑69 (MQ=255) ATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCAttt > 1:6692440‑M1/1‑69 (MQ=255) TTATTTGGTCACATCAGCACCAAACCATTTTTCgg < 1:5132048‑M1/35‑1 (MQ=255) TTATTTGGTCACATCAGCACCAAACCATTTTTCgg < 1:7386460‑M1/35‑1 (MQ=255) TTATTTGGTCACATCAGCACCAAACCATTTTTCgg < 1:2163999‑M1/35‑1 (MQ=255) TTATTTGGTCACATCAGCACCAAACCATTTTTCgg < 1:3346431‑M1/35‑1 (MQ=255) gtgaccaaataatcagcaCCAAACCATTTTTCGGaa < 1:2817314‑M2/18‑1 (MQ=255) gtgaccaaataatcagcaCCAAACCATTTTTCGGaa < 1:5653752‑M2/18‑1 (MQ=255) attTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:7481385/1‑47 (MQ=255) attTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:4949783/1‑47 (MQ=255) tttGGTCACATCAGCACCAAACCATTTTTCGGaaa > 1:7565365/1‑35 (MQ=255) tttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:5309919/57‑1 (MQ=255) tttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:6824368/57‑1 (MQ=255) tttGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCaa < 1:5164908/71‑1 (MQ=255) gaccaaataatcagcaCCAAACCATTTTTCGGAAAg > 1:7834631‑M2/17‑36 (MQ=255) gaccaaataatcagcaCCAAACCATTTTTCGGAAAg > 1:5219453‑M2/17‑36 (MQ=255) gaccaaataatcagcaCCAAACCATTTTTCGGAAAg > 1:7524283‑M2/17‑36 (MQ=255) gaccaaataatcagcaCCAAACCATTTTTCGGAAAg > 1:4667971‑M2/17‑36 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTGGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAAt > 1:487466/1‑71 (MQ=255) ttGGTCACATCAGCACCAAACCATTTTTCGGAAAgg < 1:5220324/36‑1 (MQ=255) ggTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAAtt < 1:4949429/70‑1 (MQ=255) gTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTg < 1:6290884/38‑1 (MQ=255) gTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:626608/53‑1 (MQ=255) tCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAAtt > 1:5001990/1‑68 (MQ=255) tCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAAtt > 1:3822657/1‑68 (MQ=255) acaTCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCtttt > 1:5277415/1‑51 (MQ=255) caTCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGcatca < 1:798970/71‑1 (MQ=255) atcagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGc < 1:6673765‑M2/53‑1 (MQ=255) atcagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGc < 1:2254613‑M2/53‑1 (MQ=255) atcagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGc < 1:1823081‑M2/53‑1 (MQ=255) atcagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGcatcat > 1:7379559‑M2/8‑71 (MQ=255) cagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCaa > 1:5987747‑M2/6‑60 (MQ=255) agcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCa > 1:1333907‑M2/5‑50 (MQ=255) agcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCa < 1:6347106‑M2/67‑1 (MQ=255) gcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCa < 1:7872892‑M2/36‑1 (MQ=255) gcaCCAAACCATTTTTCGG‑AAGGGCTTGCAGAGTGCCa < 1:3545617‑M2/35‑1 (MQ=255) caCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:7091340‑M2/41‑1 (MQ=255) caCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:6490081‑M2/41‑1 (MQ=255) caCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCg < 1:4960626‑M2/52‑1 (MQ=255) caCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCg < 1:1111707‑M2/52‑1 (MQ=255) | TAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCA > W3110S.gb/2001673‑2001807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |