| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 120 (1.500) | 50/96 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 330 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 | gTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:5523810/71‑1 (MQ=255) tGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:4151952/1‑70 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:1992069‑M2/67‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:6526814‑M2/66‑71 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCt > 1:867682‑M2/64‑71 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:4819745‑M2/71‑6 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:1729211‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:5386193‑M2/62‑70 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:113016‑M2/71‑7 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:5355611‑M2/71‑7 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:4675071‑M2/4‑1 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:2219018‑M2/70‑11 (MQ=255) gACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag < 1:686236‑M2/71‑14 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:936918‑M2/1‑57 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:4459252‑M2/1‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTaga < 1:3285365‑M2/13‑1 (MQ=255) ttCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc > 1:4417213‑M2/1‑54 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:6186319‑M2/58‑6 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:3876097‑M2/1‑1 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTc < 1:6551181‑M2/22‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:4988096‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:4114783‑M2/1‑52 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:579551‑M2/1‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:5208221‑M2/25‑1 (MQ=255) ccAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg < 1:318608‑M2/70‑22 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1878614‑M2/71‑24 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgg > 1:6429160‑M2/1‑48 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta > 1:1923882‑M2/1‑48 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg < 1:691214‑M2/67‑22 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:3087059‑M2/43‑46 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCt > 1:4055380‑M2/43‑50 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:2623102‑M2/29‑1 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTACAGCCATCGTCAGGAGt > 1:5235775‑M2/43‑70 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagttgacac < 1:7632583‑M2/71‑27 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:3018036‑M2/1‑45 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:1700774‑M2/71‑27 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:4749274‑M2/30‑1 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca < 1:3598152‑M2/56‑13 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccc < 1:2155909‑M2/55‑12 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:801963‑M2/30‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:7182446‑M2/8‑2 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:2292871‑M2/40‑70 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:3443232‑M2/33‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcacact < 1:751526‑M2/5‑2 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcacact < 1:2975777‑M2/5‑2 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcacact < 1:628304‑M2/5‑2 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:6119945‑M2/37‑51 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:7213300‑M2/36‑71 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc < 1:1422422‑M2/37‑1 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc < 1:1232531‑M2/37‑1 (MQ=255) aaCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcg < 1:3479225‑M2/66‑30 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:4009480‑M2/1‑35 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:4878190‑M2/54‑20 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:564461‑M2/56‑24 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:1037637‑M2/50‑18 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:1103656‑M2/71‑40 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:4328199‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:7349254‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccc < 1:2536469‑M2/41‑12 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCGATCGTCAGGAGTGATGAAGCCGAAGCCTTTg < 1:7873243‑M2/47‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:1955334‑M2/25‑71 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:1261392‑M2/23‑53 (MQ=255) ggATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1000759‑M2/35‑11 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:6821378‑M2/28‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac > 1:5911269‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa > 1:2437226‑M2/21‑70 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:5014616‑M2/21‑1 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:6221563‑M2/20‑57 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca > 1:7443915‑M2/1‑22 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTc > 1:7487105‑M2/18‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:2133366‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:7145918‑M2/17‑70 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:6773207‑M2/16‑69 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:3037003‑M2/41‑24 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:7824076‑M2/15‑37 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:1280231‑M2/15‑37 (MQ=255) acgtgggtaggatcACACATCTTTAGAGACATCGTCAGGAGTGATgaa > 1:1440330‑M2/15‑48 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca > 1:2384900‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg < 1:6968561‑M2/38‑22 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg < 1:70767‑M2/38‑22 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:2895726‑M2/1‑16 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag > 1:4218881‑M2/1‑15 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc > 1:3654969‑M2/1‑14 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtg > 1:3668936‑M2/1‑12 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:4505665‑M2/1‑11 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:2811810‑M2/38‑1 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgac < 1:5443066‑M2/71‑62 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:3123740‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:4133870‑M2/56‑48 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:7586601‑M2/6‑59 (MQ=255) aCGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:7682086‑M2/47‑40 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 1:978630‑M2/1‑7 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:5971359‑M2/43‑1 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtcacctctgactgagagtttactcac > 1:3835092‑M2/1‑6 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:4303256‑M2/64‑1 (MQ=255) aaCACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca < 1:2348959‑M2/71‑67 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca > 1:6933113‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtg > 1:2223036‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtgcacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:5296142‑M2/1‑4 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt < 1:5051813‑M2/45‑1 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |