BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2926678 =	58 (0.710)	12 (0.180)	5/82	NT	18.8%	intergenic (+350/‑207)	ygdH/sdaC	conserved hypothetical protein/predicted serine transporter
*	?	W3110S.gb	2926703 =	55 (0.810)	12 (0.180)	5/82	NT	18.8%	intergenic (+375/‑182)	ygdH/sdaC	conserved hypothetical protein/predicted serine transporter

Only 100 of 124 total aligned reads displayed.

CTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGG  >  W3110S.gb/2926634‑2926772

 ttAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTg                                                                      >  1:5106029/1‑70 (MQ=255)

  acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt                                                                       <  1:5957592‑M1/26‑1 (MQ=255)

  acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt                                                                       <  1:6720123‑M1/26‑1 (MQ=255)

  acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt                                                                       <  1:686113‑M1/26‑1 (MQ=255)

  acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt                                                                       <  1:7070430‑M1/26‑1 (MQ=255)

   aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGt                                                                     <  1:2775943/69‑1 (MQ=255)

   aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGt                                                                     <  1:756456/69‑1 (MQ=255)

   aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGt                                                                     <  1:5142606/69‑1 (MQ=255)

   aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAt                                                                   >  1:3534927/1‑71 (MQ=255)

   aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAt                                                                   >  1:4957084/1‑71 (MQ=255)

     aTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt                                                                 <  1:4551146/71‑1 (MQ=255)

     aTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt                                                                 <  1:644/71‑1 (MQ=255)

        ctctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt                                                                 >  1:2176903/1‑68 (MQ=255)

        ctctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt                                                                 >  1:5935992/1‑68 (MQ=255)

        ctctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTga                                                               <  1:4537734/70‑1 (MQ=255)

          ctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt                                                                 >  1:1352948/1‑66 (MQ=255)

           ttttACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagat                                                            >  1:275455/1‑70 (MQ=255)

             ttACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatc                                                           <  1:1904856/69‑1 (MQ=255)

             tgtatctatcagtgatcttgatctcaaatacaataatctatcttccaagtagattatTGTATTTGagatc                                                           <  1:5783019‑M2/13‑1 (MQ=255)

             tgtatctatcagtgatcttgatctcaaatacaataatctatcttccaagtagattatTGTATTTGagatc                                                           <  1:6599210‑M2/13‑1 (MQ=255)

             gtatctttcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGATTATTGTAttt                                                                 >  1:1324402‑M1/32‑63 (MQ=255)

               aCTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaag                                                        <  1:5063613/70‑1 (MQ=255)

                cTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagat                                                      <  1:6035736/71‑1 (MQ=255)

                   ttGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTTCAAG‑TAGATTATTGTAtt                                                                  >  1:610142/1‑56 (MQ=255)

                      aTTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagatc                                                     <  1:3942325/66‑1 (MQ=255)

                         tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaag                                                        <  1:4946975/60‑1 (MQ=255)

                         tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgata                                              <  1:460857/70‑1 (MQ=255)

                         tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgata                                              <  1:3341546/70‑1 (MQ=255)

                          aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaa                                                         <  1:6892611/58‑1 (MQ=255)

                          aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTga                                                >  1:4769064/1‑67 (MQ=255)

                           cAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgatagat                                           <  1:268242/71‑1 (MQ=255)

                           cAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgata                                              <  1:4727225/68‑1 (MQ=255)

                               gatctcaaatacaATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACa                                        <  1:5783019‑M1/57‑1 (MQ=255)

                               gTAAAGCGTTGGGATAATGTATCTTCCAAG‑TAGATTATTGTATTTGagatc                                                           <  1:6715563/51‑1 (MQ=255)

                               gTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagat                                                            >  1:6297407/1‑50 (MQ=255)

                                 aaaGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTg                                                                <  1:2858852/44‑1 (MQ=255)

                                  aaGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgat                                               >  1:73620/1‑60 (MQ=255)

                                  aaGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAAc                                    <  1:7642252/71‑1 (MQ=255)

                                    gCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACtt                                  >  1:2765581/1‑71 (MQ=255)

                                     cGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtg                                 <  1:6955464/71‑1 (MQ=255)

                                      gTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACtt                                  <  1:3607675/69‑1 (MQ=255)

                                      gTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACtt                                  <  1:428266/69‑1 (MQ=255)

                                      aaatacaataatctacttggaagatagattatTGTATTTGAGATCAAGATCACTGAAAGATAc                                         >  1:1324402‑M2/33‑63 (MQ=255)

                                       ttGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagatca                                                    <  1:6493610/50‑1 (MQ=255)

                                       ttGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatc                                                           <  1:1219293/43‑1 (MQ=255)

                                        tGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatc                                                           <  1:444013/42‑1 (MQ=255)

                                        tGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtgt                              >  1:6668137/1‑71 (MQ=255)

                                         gggATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga                                                             >  1:7452703/1‑39 (MQ=255)

                                         gggATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga                                                             >  1:1741505/1‑39 (MQ=255)

                                          ggATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTgtgtgt                            <  1:6084014/71‑1 (MQ=255)

                                           gATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga                                                             >  1:1465978/1‑37 (MQ=255)

                                           gATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga                                                             >  1:1317400/1‑37 (MQ=255)

                                            aataatctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtgt                              <  1:5957592‑M2/42‑1 (MQ=255)

                                            aataatctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtgt                              <  1:686113‑M2/42‑1 (MQ=255)

                                            aataatctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtgt                              <  1:7070430‑M2/42‑1 (MQ=255)

                                            ATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTa                           <  1:224613‑M1/70‑1 (MQ=255)

                                             TAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaa                                                         >  1:4814070‑M1/1‑39 (MQ=255)

                                              taatctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgt                                >  1:5815562‑M2/25‑64 (MQ=255)

                                              taatctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgt                                >  1:3220870‑M2/25‑64 (MQ=255)

                                              taatctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATc                         >  1:4756180‑M2/25‑71 (MQ=255)

                                              AATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATc                         <  1:3242048‑M1/70‑1 (MQ=255)

                                              AATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCt                        <  1:4924734‑M1/71‑1 (MQ=255)

                                               ATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCtt                       <  1:2957795‑M1/71‑1 (MQ=255)

                                               ATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCtt                       <  1:3896234‑M1/71‑1 (MQ=255)

                                                atctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCt                        <  1:5506562‑M2/48‑1 (MQ=255)

                                                atctacttggaagatagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCt                        <  1:5933379‑M2/48‑1 (MQ=255)

                                                  TATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtg                                 >  1:860252‑M1/1‑58 (MQ=255)

                                                  TATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTcc                    <  1:4681123‑M1/71‑1 (MQ=255)

                                                  TATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTcc                    <  1:216029‑M1/71‑1 (MQ=255)

                                                    tctTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtg                               >  1:915035/1‑58 (MQ=255)

                                                    tctTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtg                               >  1:7529029/1‑58 (MQ=255)

                                                    tctTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtg                               >  1:2179755/1‑58 (MQ=255)

                                                    tctTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtg                               >  1:5884679/1‑58 (MQ=255)

                                                     ctTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGcc                 >  1:7906538/1‑71 (MQ=255)

                                                       tCCAAG‑TAGATTATTGTATTTGAGATCAAGATAACTGATAGATACATAACTTGTGTGTATCTTTcc                    >  1:2646606/1‑66 (MQ=255)

                                                        ccAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCt                        <  1:4864185/61‑1 (MQ=255)

                                                        ccAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCt                        <  1:159750/61‑1 (MQ=255)

                                                        ccAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCt                        <  1:2019289/61‑1 (MQ=255)

                                                        ccAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGc                  <  1:3199150/67‑1 (MQ=255)

                                                         cAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTc              >  1:4009522/1‑70 (MQ=255)

                                                          aaG‑TAGATTATTGTATTTGAGATCAAGATCACTgataga                                            >  1:7754013/1‑39 (MQ=255)

                                                          aaG‑TAGATTATTGTATTTGAGATCAAGATCACTgataga                                            >  1:4165817/1‑39 (MQ=255)

                                                          aaG‑TAGATTATTGTATTTGAGATCAAGATCACTgataga                                            >  1:6828138/1‑39 (MQ=255)

                                                          aaG‑TAGATTATTGTATTTGAGATCAAGATCACTgataga                                            >  1:7391543/1‑39 (MQ=255)

                                                            g‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat          <  1:1724821/71‑1 (MQ=255)

                                                            g‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat          <  1:1742260/71‑1 (MQ=255)

                                                            g‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat          <  1:7434213/71‑1 (MQ=255)

                                                              tagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACtt                                  <  1:3391209‑M2/38‑1 (MQ=255)

                                                              tagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACtt                                  <  1:3490391‑M2/38‑1 (MQ=255)

                                                               agattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatta        >  1:3795223‑M2/8‑71 (MQ=255)

                                                                gattatTGTATTTGAGATCAAGATCACGGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattat       >  1:6865719‑M2/7‑71 (MQ=255)

                                                                 attatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattatt      <  1:2372781‑M2/66‑1 (MQ=255)

                                                                  ttatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattatt      <  1:1172171‑M2/66‑1 (MQ=255)

                                                                   tatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTa                           <  1:6673330‑M2/45‑1 (MQ=255)

                                                                   tatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCttt                      >  1:7518782‑M2/4‑53 (MQ=255)

                                                                   tatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTc                     >  1:6033772‑M2/4‑54 (MQ=255)

                                                                   tatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTc                     >  1:2388843‑M2/4‑54 (MQ=255)

                                                                    atTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat          <  1:6507832‑M2/62‑1 (MQ=255)

                                                                    atTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAc    <  1:2217255‑M2/68‑1 (MQ=255)

                                                                     tTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACgg  >  1:4313082‑M2/2‑71 (MQ=255)

CTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGG  >  W3110S.gb/2926634‑2926772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.