| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4435136 | 72 (0.880) | 4 (0.060) | 3/82 | NT | 6.3% | coding (591/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | W3110S.gb | = 4435147 | 59 (0.870) | coding (602/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
Only 100 of 102 total aligned reads displayed.
GTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGC > W3110S.gb/4435077‑4435216 | gtcgGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTtgtg < 1:5776896/71‑1 (MQ=255) gCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGga > 1:7939852‑M2/1‑67 (MQ=255) cTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaatga < 1:3962608‑M2/71‑7 (MQ=255) tGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaatgac < 1:2592165‑M2/71‑8 (MQ=255) gTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaatgacg > 1:4577708‑M2/1‑62 (MQ=255) gTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa > 1:4848406‑M2/1‑62 (MQ=255) gTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa > 1:7610479‑M2/1‑62 (MQ=255) gTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa > 1:6694407‑M2/1‑62 (MQ=255) gTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa > 1:5813680‑M2/1‑62 (MQ=255) gTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGAcgg < 1:1043003/71‑1 (MQ=255) tCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGAcggc < 1:951091/71‑1 (MQ=255) cATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaatg < 1:382313‑M2/65‑6 (MQ=255) cATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaatg < 1:1721461‑M2/65‑6 (MQ=255) cATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGga < 1:1966943‑M2/62‑3 (MQ=255) tggtggCGATGCACTTTCAGTCACCGACTGGTGTTGAAGCGTCATTCGCGCATTtgtg < 1:7208421/58‑1 (MQ=255) tggtggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTtgtg < 1:5604029/58‑1 (MQ=255) tggtggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGAcggcgg < 1:1958967/70‑1 (MQ=255) gtggCGATGCACTTTCATTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCt < 1:6826430/70‑1 (MQ=255) gtggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTtgtg < 1:638309/56‑1 (MQ=255) gtggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTtgtg < 1:2803490/56‑1 (MQ=255) gtggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTtgtg < 1:4481844/56‑1 (MQ=255) gtggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGga < 1:7138611‑M2/58‑3 (MQ=255) gtggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCt < 1:3344317/70‑1 (MQ=255) tggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGAcggc < 1:4719678/65‑1 (MQ=255) ggCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGt > 1:3312708/1‑71 (MQ=255) gCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGt < 1:5827882/70‑1 (MQ=255) cGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTc > 1:6921628/1‑71 (MQ=255) tGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGTCGGCTGGTTCCCg < 1:1649051/71‑1 (MQ=255) gCACTTTCAGTCACCGTCTGGTGTGGAAGCGTCATTCGCGCATTTGTGg > 1:2480405‑M2/1‑48 (MQ=255) gCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa < 1:5663867‑M2/51‑4 (MQ=255) gCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGg > 1:2491694‑M2/1‑48 (MQ=255) gCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGg > 1:2671792‑M2/1‑48 (MQ=255) cACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGaa < 1:3014254/71‑1 (MQ=255) cACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGa < 1:6111551/70‑1 (MQ=255) cACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGa < 1:3479199/70‑1 (MQ=255) cACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGa < 1:2089512/70‑1 (MQ=255) aCTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGAcgg > 1:40962/1‑55 (MQ=255) aCTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGa > 1:3813842/1‑69 (MQ=255) tttCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGaa > 1:3868461/1‑68 (MQ=255) ttCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGCCGGCGGCTGGTTccc > 1:3030017/1‑64 (MQ=255) ttCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGt > 1:1217117/1‑71 (MQ=255) tCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTtgtg > 1:1081661/1‑42 (MQ=255) tCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTtgtg > 1:4799565/1‑42 (MQ=255) tCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaat < 1:1219928‑M2/46‑5 (MQ=255) tCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGg > 1:1114294‑M2/1‑42 (MQ=255) cAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa < 1:1824137‑M2/44‑4 (MQ=255) cAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa < 1:1615372‑M2/44‑4 (MQ=255) cAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGgaa > 1:3049264‑M2/1‑41 (MQ=255) aGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGttt < 1:1919924/70‑1 (MQ=255) aGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGttt < 1:3303432/70‑1 (MQ=255) aGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTa < 1:3426324/71‑1 (MQ=255) aGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTa < 1:4180126/71‑1 (MQ=255) aGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTa < 1:6424555/71‑1 (MQ=255) tCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAg > 1:3677461/1‑71 (MQ=255) tCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAg < 1:1225408/71‑1 (MQ=255) aCCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTaa > 1:3367773/1‑68 (MQ=255) aCCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTaa > 1:1859707/1‑68 (MQ=255) aCCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTg > 1:7286008/1‑71 (MQ=255) aCCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTg > 1:5405158/1‑71 (MQ=255) aCCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTg > 1:3114624/1‑71 (MQ=255) aCCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTg > 1:6159315/1‑71 (MQ=255) aCCGACAGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTaa > 1:1013198/1‑68 (MQ=255) ccGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTg < 1:5346771/70‑1 (MQ=255) cGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGc > 1:1180670/1‑71 (MQ=255) cGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGc > 1:6439746/1‑71 (MQ=255) gACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGct > 1:2940094/1‑71 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGcttctt < 1:1855363/70‑1 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGcttctt < 1:5869627/70‑1 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGcttct < 1:136751/69‑1 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGca > 1:2294718/1‑65 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCttt > 1:7136111/1‑71 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCttt < 1:379552/71‑1 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCttt < 1:6899767/71‑1 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCttt < 1:3346910/71‑1 (MQ=255) gtgtGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCttt < 1:626373/71‑1 (MQ=255) tgGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGcc > 1:420946/1‑71 (MQ=255) tgGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGcc > 1:3714349/1‑71 (MQ=255) ggAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAg < 1:1005532/57‑1 (MQ=255) gAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCg > 1:1555821/1‑70 (MQ=255) aaGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTg < 1:6969458/66‑1 (MQ=255) aGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGcttctt > 1:5188043/1‑63 (MQ=255) gTCATTCGCGCATTTGTGgaatgacgcttccacaccagtcggtgactgaaagtgc > 1:4691682‑M2/1‑18 (MQ=255) gTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGct > 1:319690/1‑56 (MQ=255) tCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAg > 1:6307764/1‑43 (MQ=255) cATTCGCGCATTTGTGgaatgacgcttccacaccagtcg > 1:2049109‑M2/1‑16 (MQ=255) cATTCGCGCATTTGTGgaatgacgcttccacaccagtcg > 1:530653‑M2/1‑16 (MQ=255) ttCGCGCATTTGTGGAATGACGGCGTCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGAt < 1:5792963/71‑1 (MQ=255) ttCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGa > 1:7788193/1‑70 (MQ=255) tCGCGCATTTGTGgaatgacgcttccacaccagtcggtga < 1:803628‑M2/40‑28 (MQ=255) cgcgCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAg > 1:7704451/1‑71 (MQ=255) cgcgCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAg > 1:3036758/1‑71 (MQ=255) gcgcATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGcttc < 1:1966843/51‑1 (MQ=255) gcgcATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAg < 1:1484401/70‑1 (MQ=255) gcgcATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGc < 1:4928224/71‑1 (MQ=255) tttGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTa < 1:3582965/37‑1 (MQ=255) tttGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTa < 1:6323605/37‑1 (MQ=255) ttGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTACCGGATTCCAGATAGCGGtttt > 1:552377/1‑71 (MQ=255) tgtgGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGc < 1:1530928/49‑1 (MQ=255) gtgGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTc < 1:2387857/70‑1 (MQ=255) tgGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGc < 1:3139500/71‑1 (MQ=255) | GTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGC > W3110S.gb/4435077‑4435216 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |