| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 37 (0.450) | 12 (0.180) | 10/80 | NT | 27.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 33 (0.500) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547609‑4547747 | gttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAt > 1:6099436‑M2/70‑71 (MQ=255) ttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGt < 1:6946406‑M2/4‑1 (MQ=255) tttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGtt > 1:4557722‑M2/66‑70 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:2479001/1‑70 (MQ=255) taatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCa > 1:5372668‑M2/64‑71 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATc > 1:2482607/1‑71 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:1610602/1‑71 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtt < 1:7430239‑M2/12‑1 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:210424/71‑1 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:6974694/71‑1 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:4367985/71‑1 (MQ=255) aaaaaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg < 1:7057443/69‑1 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:6072270/1‑71 (MQ=255) ttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgg > 1:1955898‑M2/56‑71 (MQ=255) aaCTGAAAAAGTTTGTCGGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg < 1:7786156/70‑1 (MQ=255) tgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg > 1:5689165‑M2/49‑63 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa < 1:1013316/69‑1 (MQ=255) aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAt > 1:4255453/1‑56 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt < 1:2905857/71‑1 (MQ=255) gaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtg < 1:3921118‑M2/26‑1 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:7057071/1‑60 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:4214407/1‑47 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:4090361/1‑47 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:3911509/1‑47 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:916926/1‑55 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:3791000/42‑1 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg > 1:5788667/1‑71 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGa > 1:3768621‑M2/37‑56 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:5349792/71‑1 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:2978385/71‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:5637302/1‑41 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:6924698/1‑41 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:5174655/1‑41 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt > 1:678521/1‑39 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg < 1:2037234/36‑1 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg < 1:4082123/36‑1 (MQ=255) acttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGa > 1:7706990‑M2/33‑52 (MQ=255) acttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGa > 1:2691969‑M2/33‑52 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:1139492/35‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:5290427/35‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:6155791/35‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg < 1:4811495/71‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg < 1:2670260/71‑1 (MQ=255) ttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCTGTGTTGGCAGt > 1:7590571‑M2/31‑71 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc < 1:196044/66‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCAt > 1:571953‑M2/28‑36 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:4807708/1‑71 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc > 1:2313963/1‑67 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:2209712/1‑71 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:3598645/1‑71 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:2618173/1‑65 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 1:3994279/68‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 1:7380631/70‑1 (MQ=255) ggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt > 1:5474370‑M2/18‑51 (MQ=255) ggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:4351025‑M2/18‑70 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:5965915/70‑1 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:4071030/69‑1 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca > 1:5473199/1‑70 (MQ=255) aaaaTGGCCCCGAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:5208418/1‑69 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:7322491/1‑69 (MQ=255) aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac < 1:4284773/71‑1 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:5098938/1‑56 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:2655494/71‑1 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:7238639/71‑1 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac > 1:6160645/1‑70 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac > 1:5009100/1‑70 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt > 1:7933224‑M2/10‑60 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:3680539‑M2/5‑54 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 1:6763543‑M2/67‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:6814909‑M2/5‑71 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCTGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:5266496‑M2/4‑70 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:5565977‑M2/35‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:1211597‑M2/4‑48 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:7058573‑M2/4‑48 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 1:6258376‑M2/49‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:617350‑M2/4‑70 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:5943988‑M2/4‑70 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca > 1:1566401‑M2/3‑62 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:2169870‑M2/3‑69 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:2663516‑M2/2‑46 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:2428069‑M2/2‑50 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:6203073‑M2/70‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:2787120‑M2/70‑1 (MQ=255) | ATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547609‑4547747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |