| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4578430 | 130 (1.600) | 7 (0.090) | 3/90 | NT | 5.8% | coding (1335/1518 nt) | yjiT | conserved hypothetical protein |
| ? | W3110S.gb | = 4578441 | 110 (1.470) | coding (1346/1518 nt) | yjiT | conserved hypothetical protein | |||||
Only 100 of 154 total aligned reads displayed.
CAGTAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG > W3110S.gb/4578372‑4578509 | tAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAaact > 1:3649811‑M2/1‑67 (MQ=255) tAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAaact < 1:6211967‑M2/71‑5 (MQ=255) aaCGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTa < 1:3903190/71‑1 (MQ=255) aaCGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTa > 1:761325/1‑71 (MQ=255) aaCGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTa > 1:1032782/1‑71 (MQ=255) aaCGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTa < 1:2030853/71‑1 (MQ=255) cGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTAAAGTTACAGCAAATGAAACTTATc > 1:7160660/1‑71 (MQ=255) ttAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGa < 1:7787797/70‑1 (MQ=255) tAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGAt > 1:1592340/1‑70 (MQ=255) aGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGAtt > 1:6291591/1‑70 (MQ=255) aGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTc > 1:7101392/1‑71 (MQ=255) ggACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCg > 1:2651918/1‑71 (MQ=255) aCTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCa < 1:5016447/71‑1 (MQ=255) cTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGa < 1:6367014/53‑1 (MQ=255) tAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCAcc > 1:7926337/1‑71 (MQ=255) tAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCAcc > 1:1195593/1‑71 (MQ=255) aaaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGa < 1:1783884/51‑1 (MQ=255) aaaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGa < 1:1908822/51‑1 (MQ=255) aaaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCa > 1:6308786/1‑68 (MQ=255) aaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCAcc < 1:6469783/69‑1 (MQ=255) aaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCAcc < 1:3554567/69‑1 (MQ=255) aaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCAcc < 1:1246260/69‑1 (MQ=255) aaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCgg < 1:461429/71‑1 (MQ=255) aaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCg > 1:1179760/1‑70 (MQ=255) aaaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCg > 1:1294264/1‑70 (MQ=255) aaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGa < 1:4368761/71‑1 (MQ=255) aaGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGa < 1:4377917/71‑1 (MQ=255) aGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTAt > 1:5234690/1‑55 (MQ=255) aGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCgg > 1:6827523/1‑69 (MQ=255) aGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCgg > 1:5291413/1‑69 (MQ=255) gCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCgg > 1:1065012/1‑68 (MQ=255) gCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAag < 1:5006480/71‑1 (MQ=255) cACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACtt < 1:5912763/51‑1 (MQ=255) cACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAaga < 1:5995156/71‑1 (MQ=255) aCTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAagag < 1:5001310/71‑1 (MQ=255) cTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAagag > 1:409348/1‑70 (MQ=255) ccTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTc > 1:492321/1‑55 (MQ=255) ccTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTc > 1:2541115/1‑55 (MQ=255) ccTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAAc < 1:763074/70‑1 (MQ=255) cTGTGAAGGGATGTCAGGACGTTACAGTTATAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACaa < 1:3279854/71‑1 (MQ=255) cTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACaa < 1:6590648/71‑1 (MQ=255) tgtgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGAtt < 1:7502169/52‑1 (MQ=255) tgtgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGAtt < 1:6092130/52‑1 (MQ=255) tgtgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCg > 1:2017716/1‑54 (MQ=255) gtgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTc > 1:7773045/1‑52 (MQ=255) gtgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAAc > 1:7578266/1‑67 (MQ=255) tgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACtt < 1:4723769/42‑1 (MQ=255) tgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACtt < 1:7194936/42‑1 (MQ=255) tgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCg > 1:2607545/1‑52 (MQ=255) tgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCg > 1:2779298/1‑52 (MQ=255) tgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACaaa < 1:4518835/69‑1 (MQ=255) tgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAAt > 1:2323277/1‑70 (MQ=255) tgAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAAt < 1:5674115/70‑1 (MQ=255) gAAGGGATGTCAGGACGTTACAGTTACAGCAAATGa < 1:2299597/36‑1 (MQ=255) gAAGGGATGTCAGGACGTTACAGTTACAGCAAATGa < 1:1887212/36‑1 (MQ=255) gAAGGGATGTCAGGACGTTACAGTTACAGCAAATGa < 1:2477122/36‑1 (MQ=255) gAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAaac < 1:3825519‑M2/39‑4 (MQ=255) gAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAAt > 1:7089274/1‑69 (MQ=255) aaGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACaa < 1:7442331/66‑1 (MQ=255) aaGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAg > 1:5412225/1‑71 (MQ=255) aaGGGATGTCAGGACGTTAAAGTTACAGCAAATGAAACTTATc > 1:2696226/1‑43 (MQ=255) aGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGc < 1:3474172/71‑1 (MQ=255) ggATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCa < 1:2156921/70‑1 (MQ=255) aTGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCg < 1:4969004/71‑1 (MQ=255) aTGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCg < 1:4741886/71‑1 (MQ=255) gTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCgg > 1:4505899/1‑70 (MQ=255) tCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGa > 1:4448866/1‑38 (MQ=255) cAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCg > 1:6949226/1‑67 (MQ=255) aGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCTCACCGGAAGAGAACAAAt > 1:701344/1‑58 (MQ=255) aGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAAt > 1:2344878/1‑58 (MQ=255) aGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAgg > 1:741143/1‑71 (MQ=255) ggACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGaa > 1:6440670/1‑47 (MQ=255) ggACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGt > 1:881314/1‑71 (MQ=255) gACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGtt < 1:5707328/71‑1 (MQ=255) gACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGtt < 1:4687324/71‑1 (MQ=255) aCGTTACAGTTACAGCAAATGAaactgtaacgtcctgacatcccttcacaggtagtgcttttagtcctaat > 1:4216987‑M2/1‑22 (MQ=255) aCGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGttt < 1:2117012/71‑1 (MQ=255) gttacagttacaGCAAATGAAACTTATCGGATTCGCACCGGa < 1:3681929/42‑1 (MQ=255) tacagttacagCAAATGAaactgtaacgtcctgacatcccttcacaggtagtgcttttagtcctaatacg > 1:1360834‑M2/1‑18 (MQ=255) tacagttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACaaa < 1:2397830/50‑1 (MQ=255) tacagttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACaaa < 1:2124621/50‑1 (MQ=255) acagttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGctc > 1:2506885/1‑70 (MQ=255) cagttacagCAAATGAaactgtaacgtcctgacatcccttcacaggtagtgcttttagtcctaatacg > 1:770229‑M2/1‑16 (MQ=255) cagttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTa < 1:281780/71‑1 (MQ=255) agttacagCAAATGAaactgtaacgtcctgacatcccttcacaggtagtgcttttagt > 1:4934891‑M2/1‑15 (MQ=255) agttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGt > 1:4170859/1‑62 (MQ=255) ttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGc < 1:3242034/50‑1 (MQ=255) ttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGc < 1:1422054/50‑1 (MQ=255) ttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGc < 1:4051198/50‑1 (MQ=255) ttacagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAAt > 1:2959679/1‑71 (MQ=255) ttacagCAAATGAAACTTATCGGATTAGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGctc > 1:1546629/1‑66 (MQ=255) acagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCAt > 1:2919582/1‑50 (MQ=255) cagCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGa < 1:7695030/71‑1 (MQ=255) gCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGaaa < 1:536731/71‑1 (MQ=255) aaaTGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGc < 1:6834930/71‑1 (MQ=255) aaaTGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGc < 1:3250886/71‑1 (MQ=255) aaTGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCg > 1:673817/1‑71 (MQ=255) aTGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGt > 1:3444327/1‑71 (MQ=255) tGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTg > 1:3348619/1‑71 (MQ=255) gAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTg > 1:4828416/1‑70 (MQ=255) | CAGTAAACGTATTAGGACTAAAAGCACTACCTGTGAAGGGATGTCAGGACGTTACAGTTACAGCAAATGAAACTTATCGGATTCGCACCGGAAGAGAACAAATCAGCATCGGAAGGTTTGCTCTAAATGGAAAGCGTG > W3110S.gb/4578372‑4578509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |