Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 563,933 T→A 5.6% intergenic (‑230/‑13) fimZ ← / → argU predicted DNA‑binding transcriptional regulator/tRNA‑Arg

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb563,9330TA 5.6% 356.9 / 10.4 125intergenic (‑230/‑13)fimZ/argUpredicted DNA‑binding transcriptional regulator/tRNA‑Arg
Reads supporting (aligned to +/- strand):  ref base T (54/64);  new base A (2/5);  total (56/69)
Fisher's exact test for biased strand distribution p-value = 4.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01

Only 100 of 131 total aligned reads displayed.

GTTCAGCAACCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCG  >  W3110S.gb/563863‑564003
                                                                      |                                                                      
gTTCAGCAACCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCAt                                                                        >  1:1288367/1‑71 (MQ=255)
  tCAGCAACCAGATCAAAAGCCATTGACTCAGCAAGGCTTGACCGTATAATTCACGCGATTACACCGCATTg                                                                      >  1:6090369/1‑71 (MQ=255)
    aGCAACCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCg                                                                    <  1:2577711/71‑1 (MQ=255)
     gCAACCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCgg                                                                   >  1:5025267/1‑71 (MQ=255)
       aaCCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTa                                                                 >  1:1195822/1‑71 (MQ=255)
       aaCCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTa                                                                 >  1:2908334/1‑71 (MQ=255)
       aaCCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTa                                                                 <  1:5947993/71‑1 (MQ=255)
        aCCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTAt                                                                <  1:4157105/71‑1 (MQ=255)
          cAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCa                                                              <  1:5663027/71‑1 (MQ=255)
           aGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATc                                                               <  1:2273750/69‑1 (MQ=255)
           aGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCaa                                                             >  1:3156438/1‑71 (MQ=255)
           aGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCaa                                                             >  1:7936782/1‑71 (MQ=255)
           aGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCaa                                                             >  1:415341/1‑71 (MQ=255)
           aGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCaa                                                             >  1:115988/1‑71 (MQ=255)
             aTCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCaa                                                             >  1:5732617/1‑69 (MQ=255)
               cAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCg                                                                    <  1:5203218/60‑1 (MQ=255)
                  aaGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGccc                                                      <  1:956847/71‑1 (MQ=255)
                   aGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCg                                                                    >  1:6168855/1‑56 (MQ=255)
                   aGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCt                                                     >  1:5000487/1‑71 (MQ=255)
                   aGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTCCGGTATCAACGCGCCCt                                                     >  1:5898384/1‑71 (MQ=255)
                    gCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCtt                                                    <  1:824542/71‑1 (MQ=255)
                    gCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCtt                                                    <  1:4138405/71‑1 (MQ=255)
                       aTTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTa                                                                 >  1:3584182/1‑55 (MQ=255)
                       aTTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTAt                                                                >  1:6970305/1‑56 (MQ=255)
                       aTTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGc                                                 >  1:5081518/1‑71 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCAtt                                                                       <  1:7661511/48‑1 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCAtt                                                                       <  1:5271652/48‑1 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCg                                                                    <  1:280432/51‑1 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCg                                                                    <  1:5528094/51‑1 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCg                                                                    <  1:386715/51‑1 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAg                                                  >  1:6344040/1‑69 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt                                                >  1:1980703/1‑71 (MQ=255)
                        ttGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt                                                >  1:5214827/1‑71 (MQ=255)
                         tGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt                                                >  1:2865986/1‑70 (MQ=255)
                         tGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt                                                >  1:362497/1‑70 (MQ=255)
                          gACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt                                                >  1:3610127/1‑69 (MQ=255)
                           aCTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAg                                             <  1:187614/71‑1 (MQ=255)
                           aCTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAg                                             <  1:945344/71‑1 (MQ=255)
                             tCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTa                                                                 >  1:7124812/1‑49 (MQ=255)
                             tCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGtt                                           >  1:2268739/1‑71 (MQ=255)
                               aGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCg                                                                    <  1:1616582/44‑1 (MQ=255)
                               aGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGtt                                           <  1:1833680/69‑1 (MQ=255)
                               aGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGtt                                           <  1:6486354/69‑1 (MQ=255)
                               aGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTg                                          <  1:792374/70‑1 (MQ=255)
                               aGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTg                                          >  1:1058815/1‑70 (MQ=255)
                               aGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTg                                          <  1:3185195/70‑1 (MQ=255)
                                gCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt                                                >  1:4784934/1‑63 (MQ=255)
                                  aaGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATc                                                               <  1:4032069/46‑1 (MQ=255)
                                  aaGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGa                                        >  1:779206/1‑69 (MQ=255)
                                  aaGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATa                                      <  1:548812/71‑1 (MQ=255)
                                  aaGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATa                                      <  1:4685789/71‑1 (MQ=255)
                                  aaGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATa                                      <  1:530998/71‑1 (MQ=255)
                                   aGGGTTGACCGTATAATTCACGCGTTGATACCGCAATGCg                                                                    <  1:3295289/40‑1 (MQ=18)
                                   aGGGTTGACCGTATAATTCACGCGTTGATACCGCAATGCg                                                                    <  1:3743931/40‑1 (MQ=18)
                                    gggTTGACCGTATAATTCACGCGTTGATACCGCAATGCg                                                                    <  1:2155500/39‑1 (MQ=17)
                                      gTTGACCGTATAATTCACGCGATTACACCGCATTg                                                                      <  1:1272841/35‑1 (MQ=255)
                                      gTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAg                                             <  1:7425189/60‑1 (MQ=255)
                                       ttGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCa                                 <  1:2627518/71‑1 (MQ=255)
                                       ttGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCa                                 <  1:3787469/71‑1 (MQ=255)
                                         gACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCaa                                <  1:1020102/70‑1 (MQ=255)
                                          aCCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAAc                               <  1:4669578/70‑1 (MQ=255)
                                           ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCa                                 <  1:6576025/67‑1 (MQ=255)
                                           ccGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGa                             <  1:5563501/71‑1 (MQ=255)
                                            cGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGAc                            <  1:2026606/71‑1 (MQ=255)
                                              tataATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTg                                          <  1:3520848/55‑1 (MQ=255)
                                               ataATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt                                                <  1:5714113/48‑1 (MQ=255)
                                                taATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCtt                         <  1:4773179/70‑1 (MQ=255)
                                                 aaTTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAAc                               >  1:6510434/1‑63 (MQ=255)
                                                 aaTTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAAc                               >  1:4665778/1‑63 (MQ=255)
                                                 aaTTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACgcc                            >  1:2497653/1‑64 (MQ=255)
                                                  aTTCACGCGATTACACCGCATTGGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTa                      <  1:2714171/70‑1 (MQ=255)
                                                    tCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTa                                                   >  1:1256919/1‑40 (MQ=255)
                                                    tCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAg                    >  1:3384251/1‑71 (MQ=255)
                                                     cACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTgg                                         >  1:5929446/1‑49 (MQ=255)
                                                     cACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAg                    <  1:5230743/70‑1 (MQ=255)
                                                      aCGCGATTACACCGCATTGCGGTATCAACGCGccc                                                      >  1:6814189/1‑35 (MQ=255)
                                                      aCGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACg                              >  1:2921416/1‑59 (MQ=255)
                                                      aCGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGt                   <  1:4454791/70‑1 (MQ=255)
                                                       cgcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTc                        <  1:1668136/64‑1 (MQ=255)
                                                       cgcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTc                        <  1:7597675/64‑1 (MQ=255)
                                                        gcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACg                              <  1:3971933/57‑1 (MQ=255)
                                                        gcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCg                 <  1:6227141/70‑1 (MQ=255)
                                                        gcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCg                 <  1:157116/70‑1 (MQ=255)
                                                          gATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTgg              <  1:6491073/71‑1 (MQ=255)
                                                          gATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTgg              <  1:5596070/71‑1 (MQ=255)
                                                          gATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTgg              <  1:4830206/71‑1 (MQ=255)
                                                            ttACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGc            <  1:7321401/71‑1 (MQ=255)
                                                             tACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGcc           >  1:3532422/1‑71 (MQ=255)
                                                             tACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGc            >  1:4395248/1‑70 (MQ=255)
                                                              acacCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGcc           <  1:513321/70‑1 (MQ=255)
                                                               cacCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCg          <  1:6657749/70‑1 (MQ=255)
                                                               cacCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGc         <  1:5940730/71‑1 (MQ=255)
                                                                acCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCa        <  1:3008944/71‑1 (MQ=255)
                                                                acCGCAATGCGGTGTAATCGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTgg              >  1:6961930/1‑65 (MQ=37)
                                                                  cGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTg               >  1:4187558/1‑62 (MQ=255)
                                                                  cGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAg       >  1:4096589/1‑70 (MQ=255)
                                                                   gCATTGCGGTATCAACGCGCCCTTAGCTCAGATGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGt     <  1:6952872/71‑1 (MQ=255)
                                                                    cATTGGGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCg                 >  1:751853/1‑58 (MQ=255)
                                                                    cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCg                 >  1:4491848/1‑58 (MQ=255)
                                                                      ttGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTTGGCCGCAGGTTCg  <  1:3132359/71‑1 (MQ=255)
                                                                      |                                                                      
GTTCAGCAACCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCG  >  W3110S.gb/563863‑564003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: