New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 23679829 (0.630)10 (0.250)
+TTTAAT		 7/90 NT 22.3% coding (732/732 nt) dnaQ DNA polymerase III epsilon subunit
?W3110S.gb = 3142784 50 (1.080)coding (37/1179 nt) hybB predicted hydrogenase 2 cytochrome b type component

ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236730‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGTAAACCGGTCAT  <  W3110S.gb/3142784‑3142768
                                                                     ||||||                 
ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAT                        >  1:3262670/1‑70
 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                      <  1:4247665/71‑1
  TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                      >  1:3451771/1‑70
   GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTTGCGAGCATAATTTA                     <  1:820572/70‑1
       CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                 <  1:2639111/70‑1
       CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT                 >  1:2694050/1‑70
          ATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA                     >  1:1731618/1‑63
            GAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA            >  1:3132930/1‑70
              AGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAAC         <  1:867956/71‑1
              AGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCAGGCGAGCATAATTTAATATCAGTAAAC         >  1:3521007/1‑71
               GCCCCTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACC        <  1:267034/71‑1
                 CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG      <  1:2095670/71‑1
                  CGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA            <  1:3883680/64‑1
                      TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT                      <  1:2752146/50‑1
                         ATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGac    <  1:1223068/65‑3
                         ATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGAATAATTTAATATCAGTA            <  1:3762222/57‑1
                                                 GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG      <  1:3644411/39‑1
                                                   TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT  >  1:809058/1‑41
                                                                     ||||||                 
ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/236730‑236798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGTAAACCGGTCAT  <  W3110S.gb/3142784‑3142768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.