| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 63 (1.360) | 35/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 113 total aligned reads displayed.
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT > W3110S.gb/576000‑576063 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1942883/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:937844/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:930051/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1107640/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3792478/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4243533/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2097953/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1658872/1‑71ATGATGAACCCTGTTCTATGGCACCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2047936/1‑71 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:809442/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:676820/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:563076/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3132787/1‑70 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1251432/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCTTAG < 1:1431418/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:266847/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1065166/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:1401851/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:3792739/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:3962852/70‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:1773916/70‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:3321259/71‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:2603287/70‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2935924/1‑70 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1089914/1‑70 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:3448260/1‑71 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA < 1:3843048/70‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:4056315/71‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTG < 1:3469559/71‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACATTCCT > 1:4036813/1‑62 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:604065/63‑1 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1676856/1‑60 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:3881115/1‑60 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:2519054/1‑61 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1903219/56‑1 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1476306/56‑1 TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:957155/1‑61 TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1661710/1‑58 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCT < 1:2342781/69‑1 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCT < 1:3460823/69‑1 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:3565331/70‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:1291359/52‑1 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2120167/1‑48 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:2075824/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG > 1:3242034/1‑70 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG > 1:807895/1‑70 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA < 1:2962595/71‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3948001/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT < 1:1455672/71‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGC < 1:4220664/56‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:3933079/1‑53 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:903462/1‑53 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1969043/45‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2265682/1‑43 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:3383520/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:3137216/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:320057/42‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:1003663/1‑71 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGA > 1:256935/1‑48 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA < 1:2854727/63‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:380234/56‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:3866201/40‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT > 1:58905/1‑71 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:3121096/1‑40 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:2920097/39‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:2513946/39‑1 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTG > 1:2497586/1‑71 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTG > 1:3233969/1‑71 TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT > 1:2328734/1‑70 TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGT > 1:2284503/1‑70 TGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1808751/35‑1 ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA < 1:3616925/70‑1 ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA < 1:4011773/70‑1 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA < 1:3075681/69‑1 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA > 1:25658/1‑54 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAA > 1:2105695/1‑54 CATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA > 1:2835648/1‑66 ATATCAGGTACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT < 1:4095682/70‑1 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTT > 1:1068785/1‑71 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT < 1:1885277/70‑1 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTT > 1:475303/1‑70 ATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA > 1:930478/1‑42 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA < 1:1324286/71‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA < 1:3927655/71‑1 AGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGC > 1:308265/1‑43 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT < 1:3518344/71‑1 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT < 1:2580072/71‑1 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT < 1:1626389/71‑1 ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT > 1:2002318/1‑69 ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCAACTGTTAATTTTTTCATCGT > 1:1066537/1‑69 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT > 1:3235300/1‑67 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:1130000/46‑1 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGC < 1:3437865/69‑1 TCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCG > 1:1637495/1‑62 CGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:116389/1‑38 CGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:1925793/1‑38 CACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTT < 1:1632061/71‑1 ACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT < 1:3863984/71‑1 ACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTT < 1:522091/70‑1 CCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT > 1:1296996/1‑70 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTT > W3110S.gb/576000‑576063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |