New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 314796NA (NA)3 (0.080) 3/82 NT NA coding (291/309 nt) insE IS3 element protein
?W3110S.gb = 314812 NA (NA)coding (307/309 nt)
coding (2/867 nt)
insE
insF
IS3 element protein
IS3 element protein InsF

Only 100 of 150 total aligned reads displayed.

CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/314717‑314796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacatacttcATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAG  <  W3110S.gb/314812‑314743
                                                                                                                                                      
CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG                                                                                 <  1:269230/71‑1
CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG                                                                                 <  1:2326404/71‑1
CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG                                                                                 <  1:4043985/71‑1
CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG                                                                                 <  1:2102397/71‑1
CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG                                                                                 <  1:1355782/71‑1
 CGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                <  1:1085835/71‑1
 CGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                <  1:591972/71‑1
 CGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:3670072/1‑71
  GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGAC                                                                               <  1:1427284/71‑1
  GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:1636589/1‑70
  GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:2921945/1‑70
  GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:3984422/1‑70
  GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:1379779/1‑70
  GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:2564795/1‑70
  GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:1507842/1‑70
   AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA                                                                              >  1:3863821/1‑71
   AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA                                                                              <  1:3658283/71‑1
   AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA                                                                              <  1:2326933/71‑1
   AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA                                                                              >  1:2956310/1‑71
    GATTGCACGTCTCAACCGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACAT                                                                             <  1:247078/71‑1
    GATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTTGCTATCCTCCAAAAGGCCGCGACAT                                                                             <  1:465119/71‑1
    GATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACAT                                                                             <  1:403358/71‑1
    GATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACAT                                                                             <  1:615521/71‑1
      TTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC                                                                           <  1:694891/71‑1
        GCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         >  1:2018046/1‑71
        GCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         >  1:3620438/1‑71
        GCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         >  1:637826/1‑71
         CACGTCTCAAACGCCAGCTGTCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         <  1:2453319/70‑1
         CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC                                                                        >  1:1700670/1‑71
         CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC                                                                        <  1:1568928/71‑1
         CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC                                                                        <  1:3809607/71‑1
         CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         <  1:275078/70‑1
         CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         <  1:1238865/70‑1
         CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         <  1:847010/70‑1
          ACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC                                                                        >  1:3686987/1‑70
            GTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC                                                                        >  1:2848386/1‑68
            GTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC                                                                           >  1:3422496/1‑65
               TCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGAC                                                                               >  1:156890/1‑58
                 AAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGAC                                                                               >  1:737181/1‑56
                 AAACGCCAGCTGGCAGAACGGGATGAAGAGCTAGCTATCCTCCAAAAGGCCGCGACATA                                                                            >  1:2704593/1‑59
                   ACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:1076519/1‑53
                     GCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC                                                                           >  1:1466757/1‑56
                      CCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC                                                                        >  1:792275/1‑58
                      CCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA                                                                              >  1:185172/1‑52
                       CAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA                                                                              <  1:3832895/51‑1
                         GCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT                                                                         <  1:1606377/54‑1
                             GCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                <  1:3864444/43‑1
                                GAACGGGATGAAGAGCTTGCTATCCTCCAAAAGGCCGCGAC                                                                               <  1:1710954/41‑1
                                 AACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCATTTCAGGCGCTTCGCGAAGTATG                                                <  1:3448400/71‑1
                                 AACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                <  1:2990965/39‑1
                                  ACGGGATGAAGAGCTGGCTATCATCCAAAAGGCCGCGACATACTTC                                                                        >  1:2845323/1‑46
                                   CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC                                                                           >  1:1459349/1‑42
                                    GGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA                                                                                >  1:3122847/1‑36
                                        TGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC                                                                        <  1:4233403/40‑1
                                         GAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATA                                                                            <  1:899240/35‑1
                                                    TATCCTCCAAAAGGCCGCGACATACTTCATTTCAGGCGCTTCGCGAAGTAT                                                 >  1:1428860/1‑51
                                                                      GACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG           <  1:1969165/71‑1
                                                                       ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT          >  1:2566874/1‑71
                                                                       ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT          >  1:1183962/1‑71
                                                                       ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT          <  1:648770/71‑1
                                                                       ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT          >  1:1809611/1‑71
                                                                       ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG           <  1:4011673/70‑1
                                                                       ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTC                    >  1:3825479/1‑61
                                                                        CATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTT         <  1:3199619/71‑1
                                                                        CATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTT                                    >  1:1307102/1‑44
                                                                         ATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTC        >  1:2959162/1‑71
                                                                         ATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTC        <  1:3244501/71‑1
                                                                          TACTTCATTTCGGGCGCTTCGCGAAGTATGTCGCGGCCTTTT                                    <  1:3985284/42‑1
                                                                          TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCT       <  1:3574444/71‑1
                                                                          TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCT       <  1:350804/71‑1
                                                                          TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGG                               <  1:50511/47‑1
                                                                          TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTT                                    <  1:832768/42‑1
                                                                          TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCT                                       <  1:2893224/39‑1
                                                                           ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTG      >  1:3758053/1‑71
                                                                           ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCT       >  1:924569/1‑70
                                                                           ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG           >  1:1274364/1‑66
                                                                           ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGAT                             >  1:3575861/1‑48
                                                                           ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTT                                     >  1:955478/1‑40
                                                                           ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTT                                     >  1:4267080/1‑40
                                                                           ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTT                                      >  1:1060243/1‑39
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGC     <  1:2673853/71‑1
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTG      <  1:3075647/70‑1
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTG      <  1:1110409/70‑1
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATC              <  1:1275893/62‑1
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTC                 >  1:2085194/1‑59
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGC                      <  1:4123717/54‑1
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGA                              <  1:2980839/46‑1
                                                                            CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGG                               >  1:2231391/1‑45
                                                                             TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCC            >  1:2184724/1‑63
                                                                             TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCC                         <  1:405521/50‑1
                                                                             TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATA                            >  1:3485113/1‑47
                                                                             TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGG                               <  1:1139003/44‑1
                                                                              TCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG           >  1:1968854/1‑63
                                                                              TCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCT                                       <  1:1807535/35‑1
                                                                               CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCA   >  1:13835/1‑70
                                                                               CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCA   >  1:1848344/1‑70
                                                                               CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCC             >  1:2017044/1‑60
                                                                               CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATC              >  1:1227385/1‑59
                                                                               CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCC                         >  1:4251380/1‑48
                                                                               CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGAT                             >  1:1517955/1‑44
                                                                                                                                                      
CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/314717‑314796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacatacttcATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAG  <  W3110S.gb/314812‑314743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.