| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 314796 | NA (NA) | 3 (0.080) | 3/82 | NT | NA | coding (291/309 nt) | insE | IS3 element protein |
| ? | W3110S.gb | = 314812 | NA (NA) | coding (307/309 nt) coding (2/867 nt) |
insE insF |
IS3 element protein IS3 element protein InsF |
|||||
Only 100 of 150 total aligned reads displayed.
CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/314717‑314796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacatacttcATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAG < W3110S.gb/314812‑314743 CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG < 1:269230/71‑1CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG < 1:2326404/71‑1CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG < 1:4043985/71‑1CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG < 1:2102397/71‑1CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCG < 1:1355782/71‑1 CGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA < 1:1085835/71‑1 CGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA < 1:591972/71‑1 CGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:3670072/1‑71 GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGAC < 1:1427284/71‑1 GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:1636589/1‑70 GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:2921945/1‑70 GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:3984422/1‑70 GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:1379779/1‑70 GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:2564795/1‑70 GAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:1507842/1‑70 AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA > 1:3863821/1‑71 AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA < 1:3658283/71‑1 AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA < 1:2326933/71‑1 AGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA > 1:2956310/1‑71 GATTGCACGTCTCAACCGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACAT < 1:247078/71‑1 GATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTTGCTATCCTCCAAAAGGCCGCGACAT < 1:465119/71‑1 GATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACAT < 1:403358/71‑1 GATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACAT < 1:615521/71‑1 TTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC < 1:694891/71‑1 GCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT > 1:2018046/1‑71 GCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT > 1:3620438/1‑71 GCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT > 1:637826/1‑71 CACGTCTCAAACGCCAGCTGTCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT < 1:2453319/70‑1 CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC > 1:1700670/1‑71 CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC < 1:1568928/71‑1 CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC < 1:3809607/71‑1 CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT < 1:275078/70‑1 CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT < 1:1238865/70‑1 CACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT < 1:847010/70‑1 ACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC > 1:3686987/1‑70 GTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC > 1:2848386/1‑68 GTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC > 1:3422496/1‑65 TCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGAC > 1:156890/1‑58 AAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGAC > 1:737181/1‑56 AAACGCCAGCTGGCAGAACGGGATGAAGAGCTAGCTATCCTCCAAAAGGCCGCGACATA > 1:2704593/1‑59 ACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:1076519/1‑53 GCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC > 1:1466757/1‑56 CCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC > 1:792275/1‑58 CCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA > 1:185172/1‑52 CAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACA < 1:3832895/51‑1 GCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTT < 1:1606377/54‑1 GCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA < 1:3864444/43‑1 GAACGGGATGAAGAGCTTGCTATCCTCCAAAAGGCCGCGAC < 1:1710954/41‑1 AACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCATTTCAGGCGCTTCGCGAAGTATG < 1:3448400/71‑1 AACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA < 1:2990965/39‑1 ACGGGATGAAGAGCTGGCTATCATCCAAAAGGCCGCGACATACTTC > 1:2845323/1‑46 CGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATAC > 1:1459349/1‑42 GGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGA > 1:3122847/1‑36 TGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC < 1:4233403/40‑1 GAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATA < 1:899240/35‑1 TATCCTCCAAAAGGCCGCGACATACTTCATTTCAGGCGCTTCGCGAAGTAT > 1:1428860/1‑51 GACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG < 1:1969165/71‑1 ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT > 1:2566874/1‑71 ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT > 1:1183962/1‑71 ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT < 1:648770/71‑1 ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGT > 1:1809611/1‑71 ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG < 1:4011673/70‑1 ACATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTC > 1:3825479/1‑61 CATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTT < 1:3199619/71‑1 CATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTT > 1:1307102/1‑44 ATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTC > 1:2959162/1‑71 ATACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTC < 1:3244501/71‑1 TACTTCATTTCGGGCGCTTCGCGAAGTATGTCGCGGCCTTTT < 1:3985284/42‑1 TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCT < 1:3574444/71‑1 TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCT < 1:350804/71‑1 TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGG < 1:50511/47‑1 TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTT < 1:832768/42‑1 TACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCT < 1:2893224/39‑1 ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTG > 1:3758053/1‑71 ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCT > 1:924569/1‑70 ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG > 1:1274364/1‑66 ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGAT > 1:3575861/1‑48 ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTT > 1:955478/1‑40 ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTT > 1:4267080/1‑40 ACTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTT > 1:1060243/1‑39 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGC < 1:2673853/71‑1 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTG < 1:3075647/70‑1 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTG < 1:1110409/70‑1 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATC < 1:1275893/62‑1 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTC > 1:2085194/1‑59 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGC < 1:4123717/54‑1 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGA < 1:2980839/46‑1 CTTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGG > 1:2231391/1‑45 TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCC > 1:2184724/1‑63 TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCC < 1:405521/50‑1 TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATA > 1:3485113/1‑47 TTCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGG < 1:1139003/44‑1 TCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCG > 1:1968854/1‑63 TCATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCT < 1:1807535/35‑1 CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCA > 1:13835/1‑70 CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCA > 1:1848344/1‑70 CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCC > 1:2017044/1‑60 CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATC > 1:1227385/1‑59 CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCC > 1:4251380/1‑48 CATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGAT > 1:1517955/1‑44 CCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/314717‑314796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacatacttcATTTCAGGCGCTTCGCGAAGTATGTCGCGGCCTTTTGGAGGATAGCCAGCTCTTCATCCCGTTCTGCCAG < W3110S.gb/314812‑314743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |