| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 34 (0.730) | 27 (0.630) | 23/94 | NT | 46.8% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 30 (0.700) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT < W3110S.gb/4125340‑4125279 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG > 1:2449909/1‑70GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1998208/70‑1 AATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA > 1:3127040/1‑70 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT < 1:682126/71‑1 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTT < 1:1940862/70‑1 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTT < 1:1945888/70‑1 TAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTT < 1:3690549/69‑1 AGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT > 1:3743474/1‑61 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:1219798/1‑70 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAA < 1:2790145/71‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:3088917/49‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1919976/49‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:2843844/1‑70 CAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC > 1:2181947/1‑71 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTCAATTATTTTTTCGCGGGTGAAACGACTCCT > 1:3762037/1‑71 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCG < 1:2191847/53‑1 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGG > 1:835626/1‑71 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGG > 1:27887/1‑71 AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGT < 1:3223693/71‑1 AATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTC > 1:3839515/1‑66 ATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:3377986/57‑1 TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC < 1:1531430/50‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG < 1:812856/70‑1 TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAC > 1:3571497/1‑70 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA < 1:3724327/70‑1 CTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC > 1:1336809/1‑70 CTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC > 1:3616241/1‑70 AATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG > 1:1241609/1‑70 AATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG > 1:3254407/1‑70 CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT < 1:3963150/70‑1 CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT < 1:303655/70‑1 GTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:3954736/1‑71 GTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG < 1:4159944/57‑1 TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:2560858/1‑57 TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:3801048/54‑1 TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT > 1:3486789/1‑71 TAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:2230573/49‑1 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT < 1:3269571/70‑1 GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTT > 1:1780014/1‑64 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:118930/64‑1 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT > 1:2818195/1‑64 TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT < 1:154318/49‑1 TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT < 1:935155/49‑1 TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC > 1:612438/1‑42 TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAA < 1:2178550/40‑1 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT < W3110S.gb/4125340‑4125279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |