| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 72 (1.590) | 43/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 106 total aligned reads displayed.
GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172377‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT < W3110S.gb/3920281‑3920212 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:291798/1‑71GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:3911957/1‑71 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:1365849/71‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:3874933/71‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:1880383/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:2350069/70‑1 CATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:3393096/1‑70 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT < 1:3323716/71‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT < 1:3739070/71‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT > 1:4266792/1‑71 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT < 1:1019555/71‑1 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:2966602/68‑1 GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTC > 1:3992230/1‑71 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG > 1:2795352/1‑70 CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTT < 1:224675/71‑1 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT > 1:2334436/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT > 1:476989/1‑60 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:3566751/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC > 1:1882982/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:2283314/1‑56 TGACTGATAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:2693504/60‑1 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT > 1:2739838/1‑71 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT > 1:2451584/1‑71 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT > 1:3297724/1‑71 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT < 1:2520973/69‑1 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:2071422/60‑1 GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG > 1:1901655/1‑71 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCT < 1:532986/71‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC < 1:2614190/71‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTAT > 1:1213349/1‑70 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTA < 1:2497887/69‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG > 1:1774081/1‑48 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCA < 1:2715189/71‑1 GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA < 1:4208037/53‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC > 1:4282807/1‑71 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT > 1:476523/1‑43 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:3605605/1‑71 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG < 1:1262516/70‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG < 1:27937/70‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCT < 1:1252396/55‑1 CTCACTTAGCCGCGTGTCCAATATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG < 1:2259448/70‑1 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:1048311/45‑1 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG > 1:3065435/1‑71 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG > 1:3070186/1‑71 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG > 1:638177/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG > 1:3011103/1‑55 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT < 1:1546815/67‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG < 1:2662308/37‑1 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA > 1:1767722/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA > 1:598520/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTT < 1:2924891/69‑1 CGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:2267197/70‑1 CGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:1309529/70‑1 CGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTC > 1:1613513/1‑35 GCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA > 1:1896277/1‑69 GCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC > 1:2551729/1‑40 GTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCT > 1:2026214/1‑71 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCT < 1:1779152/70‑1 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCT < 1:1002914/70‑1 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTC > 1:1026674/1‑67 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG > 1:1509122/1‑55 ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA > 1:2922214/1‑70 ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA > 1:1180754/1‑70 ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA > 1:1921383/1‑70 ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:3319783/1‑52 TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG > 1:3739482/1‑70 TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG > 1:2748874/1‑49 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGA < 1:484493/44‑1 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCC < 1:4257887/41‑1 TGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:695889/1‑47 GCTGGGTAAGATCAGTGTTCTTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGG < 1:2495964/70‑1 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGG < 1:3396615/70‑1 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGG < 1:2738665/70‑1 TGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:4137309/1‑69 TGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:114964/1‑69 GGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA < 1:3790363/52‑1 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA < 1:2191869/71‑1 GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTC < 1:1872064/55‑1 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAA < 1:2022707/71‑1 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAA < 1:1098044/71‑1 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGA > 1:2728380/1‑69 AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAG > 1:1957796/1‑71 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:3296649/1‑38 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA > 1:2131636/1‑38 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG > 1:3349618/1‑37 AGATCAGTGTTCGTACACTTCTCTGATATCCAGAACGA > 1:2734193/1‑38 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT < 1:1158497/49‑1 ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG < 1:4159935/35‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTC > 1:739997/1‑71 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTC > 1:2896878/1‑71 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA > 1:2591301/1‑44 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA < 1:3419173/43‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA < 1:3414182/43‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG > 1:1078198/1‑37 CAGTGATCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA > 1:2529141/1‑43 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT < 1:536699/71‑1 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT > 1:2236532/1‑71 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC < 1:1969566/70‑1 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC < 1:435977/70‑1 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC < 1:1957050/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172377‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT < W3110S.gb/3920281‑3920212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |