New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3748799 =	4 (0.090)	51 (1.100)	41/102	NT	92.7%	coding (184/984 nt)	tnaB	tryptophan transporter of low affinity
	?	W3110S.gb	4056222 =	NA (NA)					intergenic (‑564/+15)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'

TTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3748868‑3748799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC  >  W3110S.gb/4056222‑4056290                                                                                                                                             TTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGG                                                                      >  1:59112/1‑71   TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGG                                                                     >  1:910434/1‑70   TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGG                                                                     >  1:1202292/1‑70   TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGG                                                                     >  1:1936262/1‑70      CTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAA                                                                  <  1:595079/70‑1         GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGAC                                                              >  1:3736076/1‑71         GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGA                                                               <  1:589791/70‑1            TGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC                                                           <  1:2855448/71‑1               CTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAAC                                                        >  1:1822572/1‑71                 TTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                       >  1:1769954/1‑70                  TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:3245121/1‑71                  TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                     >  1:3322622/1‑71                  TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                       <  1:561726/69‑1                  TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGG                                                                      >  1:967445/1‑54                    TCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACT                                                             >  1:4129018/1‑61                      CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 <  1:1882057/71‑1                      CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 >  1:582657/1‑71                      CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                       <  1:2044020/65‑1                      CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                       <  1:3875856/65‑1                       TTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT                                                                 <  1:1768100/54‑1                         ATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAG                                              >  1:2957054/1‑71                         ATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAG                                              >  1:995298/1‑71                         ATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGAT                                                <  1:475097/69‑1                              TGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTT                                         >  1:1660736/1‑71                              TGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACT                                                             <  1:1095697/51‑1                               GCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTT                                         <  1:970307/70‑1                                CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTA                                       <  1:2101287/71‑1                                CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC                                                           >  1:4241915/1‑51                                  TGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATG                                     >  1:3738198/1‑71                                      TTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                   >  1:2336076/1‑69                                       TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA                                 <  1:2653274/70‑1                                       TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA                                 <  1:2024117/70‑1                                       TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA                                 <  1:4099057/70‑1                                       TTCAATGATTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                   >  1:2865551/1‑68                                         CAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                               >  1:1095160/1‑70                                         CAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                 <  1:1107974/52‑1                                          AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATA                             <  1:4282202/71‑1                                            TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                           >  1:1195454/1‑71                                            TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGAC                                                              <  1:982717/36‑1                                              CTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGC                         <  1:2631196/71‑1                                              CTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGC                         >  1:473914/1‑71                                                 CATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTT                                                      <  1:1931398/39‑1                                                   TTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATG                                     <  1:3173832/54‑1                                                    TCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTT                                          <  1:3181722/48‑1                                                     CCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAA                            >  1:1360722/1‑61                                                      CGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTG                                            <  1:2301832/44‑1                                                         GTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT              <  1:2286622/71‑1                                                          TTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG             <  1:3441411/71‑1                                                           TATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            >  1:3669314/1‑71                                                            ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAA                            >  1:2325585/1‑54                                                             TTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATTTTCAGATAATGCCCGATGACTTTGTCA          <  1:178270/71‑1                                                             TTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG             <  1:2661875/68‑1                                                              TGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT         >  1:2279428/1‑71                                                               GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG        >  1:23362/1‑71                                                               GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG        >  1:2550777/1‑71                                                               GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCACGATGACTTTGTCATG        >  1:1703070/1‑71                                                                TTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC       <  1:529416/71‑1                                                                  tTTAGGGTAATGACTGCAACTTATTGATAGTGTTT                                         <  1:3588507/34‑1                                                                     AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGGAGCT   <  1:4193454/70‑1                                                                     AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC  >  1:3529484/1‑71                                                                     AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            >  1:4149740/1‑61                                                                      GGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC  <  1:4252989/70‑1                                                                      GGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT            <  1:3957789/60‑1                                                                                                                                             TTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3748868‑3748799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC  >  W3110S.gb/4056222‑4056290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.