| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 47 (1.020) | 39 (1.080) +CGCGTACAACT |
27/80 | NT | 45.0% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 75 (1.620) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 147 total aligned reads displayed.
GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/235976‑236113 | ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:857361/1‑69 (MQ=255)ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACaa < 1:2292149/71‑1 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:3517516‑M2/66‑71 (MQ=255) aaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:820890/70‑1 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:1431292‑M2/63‑71 (MQ=255) aaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGa > 1:4204582/1‑71 (MQ=255) acgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa < 1:3427146‑M2/9‑1 (MQ=255) tCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGa > 1:3768772/1‑67 (MQ=255) tCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGAc > 1:3925378/1‑68 (MQ=255) tCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACAt > 1:3879346/1‑70 (MQ=255) tttttatcgccactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa > 1:3785232‑M2/58‑70 (MQ=255) tttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa > 1:640784‑M2/58‑70 (MQ=255) aCCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGa > 1:2445149/1‑64 (MQ=255) aCCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt > 1:77531/1‑71 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACATGTCTGACATAAAt < 1:1334745/70‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:3560587/70‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:56218/70‑1 (MQ=255) ctttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:3866049/64‑1 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCg > 1:3804303/1‑71 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc > 1:1701229‑M2/50‑71 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa > 1:3619254/1‑66 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc < 1:3583362/70‑1 (MQ=255) aactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCt < 1:4198547‑M2/23‑1 (MQ=255) aaGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa > 1:2983259/1‑71 (MQ=255) tctctactgtttctccatacccgtttttttggtcgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:3238302‑M2/45‑69 (MQ=255) tctcTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:240894/55‑1 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa > 1:3982010‑M2/43‑55 (MQ=255) tactgtttctccatacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGa > 1:725849‑M2/42‑59 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactc > 1:2944344‑M2/41‑41 (MQ=255) actgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:2870915‑M2/40‑50 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:1176424/45‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa < 1:1701722‑M2/30‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa < 1:3339527‑M2/30‑1 (MQ=255) tgtttctccatacccgtttttttggacgcgtacaactCAAGTCTg < 1:2706578‑M2/8‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg > 1:216149/1‑64 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACt < 1:3695836/68‑1 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCt > 1:3395592‑M2/35‑41 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCt > 1:2271248‑M2/35‑41 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:915436‑M2/35‑50 (MQ=255) aGACTTCCTGAAATTGAATCGAACTGTAAAACCACAAGTCTGACATAAATGACCGCTATGAGCa > 1:977340/1‑64 (MQ=255) ctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAtt < 1:2048191‑M2/38‑1 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:1121110/1‑62 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1956277‑M2/28‑71 (MQ=255) tGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:2323591/39‑1 (MQ=255) acccgtttttttggacgcgtacaactCAAGTCTGa > 1:1154186‑M2/27‑35 (MQ=255) acccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:3840555‑M2/27‑70 (MQ=255) aaTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGCCCGCTATGAGCACTGCAATTACACGc > 1:2499141/1‑67 (MQ=255) aaTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:2321530/1‑48 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:3187333‑M2/34‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:2687063‑M2/37‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:677241/37‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAATg < 1:1593829/38‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa < 1:697274/39‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1538435/1‑65 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:1885987‑M2/21‑61 (MQ=255) tGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:3265193/1‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1391567‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:3827886‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:1214415/70‑1 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:4027505/1‑71 (MQ=255) ttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt > 1:1781687‑M2/19‑71 (MQ=255) aaTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:1505114/71‑1 (MQ=255) aaTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt > 1:1544541/1‑71 (MQ=255) aaTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:433039/71‑1 (MQ=255) aTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc > 1:1579264/1‑71 (MQ=255) aTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:239789/71‑1 (MQ=255) aTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc > 1:2507182/1‑71 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:3654734‑M2/54‑1 (MQ=255) tCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct > 1:364612/1‑71 (MQ=255) tCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct > 1:1906404/1‑71 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:3525803/1‑56 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:3062081/1‑56 (MQ=255) ggacgcgtacaactCAAGTCTGACATAAATGACCGCt < 1:3785120‑M2/23‑1 (MQ=255) ggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCg > 1:974404‑M2/15‑71 (MQ=255) gAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:4180613/70‑1 (MQ=255) aaCTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:3023146/47‑1 (MQ=255) acgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAtt > 1:545292‑M2/13‑50 (MQ=255) acgcgtacaactCAAGTCTGACATAAAAGACCGCTATGAGCACTg > 1:3921992‑M2/13‑45 (MQ=255) cgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTa < 1:243449‑M2/60‑1 (MQ=255) tGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAc > 1:239280/1‑71 (MQ=255) gTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAtt < 1:3448637/47‑1 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:3130877/59‑1 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAcc > 1:3035584/1‑70 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAcc > 1:1687087/1‑70 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:441834‑M2/64‑2 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:210733/1‑43 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt < 1:1686253/58‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa < 1:167560/70‑1 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTa > 1:3269768‑M2/6‑65 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAccgca < 1:3851497‑M2/65‑3 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAccgca > 1:84422‑M2/6‑68 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:4216609‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1112107‑M2/6‑71 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCTCTACCGCAac < 1:3552221‑M2/67‑1 (MQ=255) aCGACAAGTCTGACATAAATGACCTCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:1847908/1‑71 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:520847/1‑71 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:1063403/1‑71 (MQ=255) cGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAacc < 1:3709447/71‑1 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:4260826‑M2/34‑1 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAaccac > 1:1408072‑M2/2‑71 (MQ=255) | GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/235976‑236113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |