| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,255,918 | C→T | 10.9% | G538S (GGC→AGC) | ycgV ← | predicted adhesin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,255,918 | 0 | C | T | 10.9% | 161.4 / 9.1 | 55 | G538S (GGC→AGC) | ycgV | predicted adhesin |
| Reads supporting (aligned to +/- strand): ref base C (25/23); new base T (4/2); total (30/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 | |||||||||||
CGTGATTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCAAATGTG > W3110S.gb/1255849‑1255988 | cGTGATTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGcc < 1:454280/70‑1 (MQ=255)cGTGATTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGcc < 1:157478/70‑1 (MQ=255)cGTGATTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCca < 1:131684/71‑1 (MQ=255) aTTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCcaacaa > 1:341560/1‑71 (MQ=255) aTTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCcaacaa > 1:2007434/1‑71 (MQ=255) aTTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCAATACCCTCGCcaacaa > 1:3966811/1‑71 (MQ=255) cAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACAt > 1:2240488/1‑69 (MQ=255) gCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACTCTCGCCAACAACATCAg > 1:1450067/1‑70 (MQ=255) gCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACACCATTACCCTCGCcaacaa > 1:1593593/1‑64 (MQ=255) tCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCca < 1:1969061/53‑1 (MQ=255) ccGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCataa > 1:3757822/1‑70 (MQ=255) ccGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCata < 1:4032366/69‑1 (MQ=255) cTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATaaa < 1:3175030/71‑1 (MQ=255) tGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAg > 1:4207511/1‑71 (MQ=255) cAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCTAACAACATCAGCACGCataata > 1:1982495/1‑61 (MQ=255) cAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGt > 1:351944/1‑71 (MQ=255) aaTAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGt < 1:2504297/70‑1 (MQ=255) aTAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGtt < 1:592986/70‑1 (MQ=255) tAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCa > 1:404588/1‑49 (MQ=255) tAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCa > 1:3566378/1‑49 (MQ=255) aaaTCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATc > 1:2300124/1‑44 (MQ=255) aaaTCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTAcc > 1:332719/1‑71 (MQ=255) aaTCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACAt > 1:1537989/1‑42 (MQ=255) cTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACt < 1:891580/58‑1 (MQ=255) cTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACt < 1:3250462/58‑1 (MQ=255) ttattattaACGCCATTACCCTCGCCAACAACATc > 1:1785195/1‑35 (MQ=255) tattattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGc < 1:1837368/63‑1 (MQ=255) attattaACGCCATTACCCTCGCAAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTtct > 1:1192311/1‑71 (MQ=255) ttattaACGCCATTACCCTCGCTAACAACATCAGCACGCATAATAAAgg < 1:2314015/49‑1 (MQ=255) ttattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTc > 1:3797040/1‑63 (MQ=255) ttattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAgg < 1:349540/66‑1 (MQ=255) ttattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTtct < 1:480388/70‑1 (MQ=255) ttattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTtc < 1:2588803/69‑1 (MQ=255) ttattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTtc < 1:2738405/69‑1 (MQ=255) tattaACGCCATTACCCTCGCCAACAACATCAGCACGCat < 1:1597186/40‑1 (MQ=255) tattaACGCCATTACCCTCGCCAACAACATCAGCACGCat < 1:2668054/40‑1 (MQ=255) tattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCt < 1:352864/61‑1 (MQ=255) tattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCa > 1:1978991/1‑63 (MQ=255) tattaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCa > 1:3325517/1‑63 (MQ=255) attaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAgg < 1:2029868/64‑1 (MQ=255) attaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTa > 1:1899519/1‑71 (MQ=255) ttaACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAgg < 1:3731753/63‑1 (MQ=255) aaCGCCATTACCCTCGCTAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGt > 1:375324/1‑71 (MQ=255) aaCGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGt > 1:3172899/1‑71 (MQ=255) aCGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGATCAGTTtc > 1:2813233/1‑63 (MQ=255) cGCCATTACCCTCGCTAACAACATCAGCACGCATAATAAAgg > 1:671209/1‑42 (MQ=255) cGCCATTACCCTCGCTAACAACATCAGCACGCATAATAAAgg > 1:2185978/1‑42 (MQ=255) cGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGttt < 1:1193770/71‑1 (MQ=255) cGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGtt > 1:2496484/1‑70 (MQ=255) ccATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTa < 1:2270488/70‑1 (MQ=255) aTTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTAc > 1:3659687/1‑63 (MQ=255) ttACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGt < 1:2746814/43‑1 (MQ=255) tACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAAtgtg > 1:2216023/1‑71 (MQ=255) aCCCTCGCTAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAAtgtg < 1:2757398/70‑1 (MQ=255) aCCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTaa > 1:1252422/1‑66 (MQ=255) aCCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAAtgtg < 1:3273466/70‑1 (MQ=255) aCCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTgg > 1:1569308/1‑71 (MQ=255) cTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCa > 1:654944/1‑70 (MQ=255) tCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGt > 1:4217131/1‑58 (MQ=255) gCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAgg < 1:854630/46‑1 (MQ=255) gCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCaaa < 1:2750493/69‑1 (MQ=255) gCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCAAAtg > 1:1777774/1‑71 (MQ=255) gCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCAAAt < 1:3219529/70‑1 (MQ=255) ccAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTa > 1:984081/1‑52 (MQ=255) ccAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGttt < 1:2070534/57‑1 (MQ=255) ccAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCAAAtgt < 1:520426/71‑1 (MQ=255) caacaaCATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGtt > 1:2200556/1‑46 (MQ=255) caacaaCATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCAAAtgtg > 1:1484234/1‑71 (MQ=255) caacaaCATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCAAAtgt < 1:3222089/70‑1 (MQ=255) | CGTGATTACCAGCACTACTCCCGCTGATATTCAATAAATCCCCTTTATTATTAACGCCATTACCCTCGCCAACAACATCAGCACGCATAATAAAGGTACTGTTACCGCTCAGGTTCTCTACGTTTAATGTGGCAAATGTG > W3110S.gb/1255849‑1255988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |