Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,085 T→C 42.7% S233S (AGT→AGC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,0850TC42.7% 60.5 / 183.7 136S233S (AGT→AGCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (28/50);  new base C (24/34);  total (52/84)
Fisher's exact test for biased strand distribution p-value = 5.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.08e-01

Only 100 of 140 total aligned reads displayed.

GTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACG  >  W3110S.gb/71015‑71155
                                                                      |                                                                      
gTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGt                                                                        <  1:235511/71‑1 (MQ=255)
 tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGt                                                                        >  1:64889/1‑70 (MQ=255)
 tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTc                                                                       <  1:175847/71‑1 (MQ=255)
     tCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCa                                                                      <  1:1679896/68‑1 (MQ=255)
     tCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGc                                                                   <  1:148912/71‑1 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGc                                                                   >  1:3495536/1‑69 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                  >  1:2892887/1‑70 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCg                                                                  >  1:1235096/1‑70 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGa                                                                 <  1:2333966/71‑1 (MQ=255)
          tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                              >  1:1148954/1‑71 (MQ=255)
          tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                              >  1:3800379/1‑71 (MQ=255)
          tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                              >  1:1096974/1‑71 (MQ=255)
          tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                              >  1:3981231/1‑71 (MQ=255)
            ttttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctg                                                            >  1:24428/1‑71 (MQ=255)
            ttttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAg                                                               >  1:4136750/1‑68 (MQ=255)
              ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgct                                                          >  1:873864/1‑71 (MQ=255)
              ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgc                                                           <  1:1933419/70‑1 (MQ=255)
               tCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                                          <  1:592302/70‑1 (MQ=255)
                ccGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtt                                                         <  1:2963244/70‑1 (MQ=255)
                 cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                       >  1:598698/1‑71 (MQ=255)
                 cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtttt                                                       <  1:3480544/71‑1 (MQ=255)
                 cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtttt                                                       <  1:3048293/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                      <  1:529202/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTg                                                      <  1:3264593/71‑1 (MQ=255)
                   ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                     <  1:2935059/71‑1 (MQ=255)
                   ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                     <  1:3211421/71‑1 (MQ=255)
                    cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAg                                                    <  1:2077316/71‑1 (MQ=255)
                     agcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGTACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGc                                                   <  1:1241185/71‑1 (MQ=255)
                     agcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                    >  1:4166279/1‑70 (MQ=255)
                      gcagTTATGGATTAGCGTCTTAAGCTGGCGCGAGTACCAACGTATCAGCCAGGCGAAGCTGCtt                                                         <  1:2744263/64‑1 (MQ=255)
                      gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtt                                                         <  1:2961358/64‑1 (MQ=255)
                      gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtt                                                         <  1:3367777/64‑1 (MQ=255)
                      gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAg                                                               <  1:2493487/58‑1 (MQ=255)
                      gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtttt                                                       <  1:662278/66‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                                 >  1:695636/1‑71 (MQ=255)
                        agTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCAc                                                 >  1:2513345/1‑70 (MQ=255)
                           tAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGaa                                                                >  1:307467/1‑52 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                    >  1:277183/1‑63 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                            >  1:3133573/1‑71 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                            >  1:25583/1‑71 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGATTTTGAGCACTACCCg                                           <  1:1771988/71‑1 (MQ=255)
                              ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                           >  1:488556/1‑54 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac                                              <  1:852393/65‑1 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGAt                                        <  1:2475814/71‑1 (MQ=255)
                                  tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGc                                      >  1:3054484/1‑71 (MQ=255)
                                  tAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                      >  1:2581376/1‑71 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCa                                                  >  1:1706462/1‑58 (MQ=255)
                                    gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                    <  1:2021654/71‑1 (MQ=255)
                                    gCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                           <  1:587016/64‑1 (MQ=255)
                                    gCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCt                                    <  1:1299994/71‑1 (MQ=255)
                                     cGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTa                                   <  1:1079856/71‑1 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                                 <  1:446846/71‑1 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGc                                                                   <  1:4266046/37‑1 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtt                                                         <  1:2791597/47‑1 (MQ=255)
                                        cTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGa                                                     >  1:1030905/1‑50 (MQ=255)
                                        cTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTAt                                  >  1:3463682/1‑69 (MQ=255)
                                         ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                                 <  1:4081987/37‑1 (MQ=25)
                                         ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTAt                                  <  1:852084/68‑1 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGc                                      >  1:4076982/1‑62 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                             >  1:2997665/1‑71 (MQ=255)
                                            aGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                             <  1:113356/70‑1 (MQ=255)
                                            aGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAc                            >  1:2416613/1‑71 (MQ=255)
                                              cTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCg                          <  1:1254630/71‑1 (MQ=255)
                                              cTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCg                          <  1:1153522/71‑1 (MQ=255)
                                              cTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCg                          <  1:1984770/71‑1 (MQ=255)
                                              cTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCg                          <  1:2963364/71‑1 (MQ=255)
                                               tGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCg                          <  1:1931529/70‑1 (MQ=255)
                                                ggCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                      <  1:3424877/41‑1 (MQ=37)
                                                ggCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtc                        >  1:1288038/1‑71 (MQ=255)
                                                 gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgt                         <  1:757375/69‑1 (MQ=255)
                                                 gcgcGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcg                       <  1:437113/71‑1 (MQ=255)
                                                 gcgcGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgt                         <  1:1166833/69‑1 (MQ=255)
                                                 gcgcGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgt                         <  1:1026446/69‑1 (MQ=255)
                                                   gcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                                        <  1:538436/52‑1 (MQ=255)
                                                   gcgAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAg                                                    >  1:1162917/1‑40 (MQ=255)
                                                   gcgAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcggt                     >  1:458397/1‑71 (MQ=255)
                                                    cgAGGACCAACGTATCAGCCAGGCGAAGCTGCttt                                                        <  1:2947667/35‑1 (MQ=25)
                                                    cgAGGACCAACGTATCAGCCAGGCGAAGCTGCttt                                                        <  1:618054/35‑1 (MQ=25)
                                                    cgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcggtc                    <  1:1045981/71‑1 (MQ=255)
                                                     gAGGACCAACGTATCAGCCAGTCGAAGCTGCTTTTGAGcaccac                                              >  1:335840/1‑44 (MQ=21)
                                                      aGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                  <  1:2497910/71‑1 (MQ=255)
                                                      aGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                  <  1:1481976/71‑1 (MQ=255)
                                                       ggACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCa                 <  1:534763/71‑1 (MQ=255)
                                                         aCCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAAt               >  1:4007431/1‑71 (MQ=255)
                                                          ccAACGTATCAGCCAGGCGAAGTTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATg              <  1:204740/71‑1 (MQ=255)
                                                           cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt             <  1:3257761/71‑1 (MQ=255)
                                                           cAACGCATTAGTCAGGCGAATCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt             <  1:2360607/71‑1 (MQ=255)
                                                           cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTa                                   <  1:247635/49‑1 (MQ=255)
                                                           cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt             <  1:1748288/71‑1 (MQ=255)
                                                           cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt             <  1:3023809/71‑1 (MQ=255)
                                                             aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                     >  1:4091134/1‑45 (MQ=255)
                                                             aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                     >  1:2595839/1‑45 (MQ=255)
                                                             aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg           <  1:2380363/71‑1 (MQ=255)
                                                              cGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGtt            >  1:1484421/1‑69 (MQ=255)
                                                                cATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTa                                   <  1:3149514/44‑1 (MQ=255)
                                                                  ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                  <  1:895797/59‑1 (MQ=255)
                                                                  ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt      >  1:1976904/1‑71 (MQ=255)
                                                                  ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt      <  1:3486929/71‑1 (MQ=255)
                                                                    aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGa    >  1:3874710/1‑71 (MQ=255)
                                                                      tCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACg  <  1:3824645/71‑1 (MQ=255)
                                                                      |                                                                      
GTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACG  >  W3110S.gb/71015‑71155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: