Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 3,824,410 T→A 100% pseudogene (543/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,824,4100TA100.0% 121.1 / NA 42pseudogene (543/687 nt)rphECK3633:JW3618:b3643; ribonuclease PH
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (20/22);  total (20/22)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GCAGTTTCTGTCGGAATTGTGAACGGCGAAGCGGTTTGCGATCTGGAATACGTTGAAGACTCTGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCATTGAAGTGC  >  W3110S.gb/3824348‑3824468
                                                              |                                                          
gCAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCa                                                      >  1:971484/1‑69 (MQ=255)
     ttCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc                                                >  1:4262521/1‑70 (MQ=255)
      tCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCa                                                      <  1:1795653/63‑1 (MQ=255)
          tCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGAc                                             <  1:785282/68‑1 (MQ=255)
            ggtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGaa                                        >  1:3947333/4‑71 (MQ=255)
            ggtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGa                                         <  1:650446/67‑1 (MQ=255)
              taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACg                                      <  1:2195473/70‑1 (MQ=255)
                  gtaaaCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGt                                  >  1:1767870/4‑71 (MQ=255)
                  gtaaaCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGt                                  >  1:3247177/4‑71 (MQ=255)
                  gtaaaCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGt                                  >  1:1941579/4‑71 (MQ=255)
                   taaaCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGt                                  <  1:3807538/68‑1 (MQ=255)
                     aaCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGtgat                               <  1:2786992/71‑1 (MQ=255)
                     aaCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGtgat                               >  1:2566955/1‑71 (MQ=255)
                     aaCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGtgat                               <  1:1618752/71‑1 (MQ=255)
                      aCGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGtgatg                              <  1:2234389/71‑1 (MQ=255)
                         gtgAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGAcc                           <  1:1687184/69‑1 (MQ=255)
                         gtgAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGAcc                           <  1:3341702/69‑1 (MQ=255)
                           gAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCg                          <  1:860362/70‑1 (MQ=255)
                           gAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCg                          >  1:3966049/1‑70 (MQ=255)
                               caatttGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGtga                                >  1:3687167/4‑60 (MQ=255)
                                 atttGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGAc                            >  1:2793092/2‑62 (MQ=255)
                                  tttGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACggg                  >  1:1030885/1‑71 (MQ=255)
                                    tGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGgcg                >  1:585458/1‑71 (MQ=255)
                                    tGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGgcg                >  1:1774712/1‑71 (MQ=255)
                                      cGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGgcgc               <  1:1954554/70‑1 (MQ=255)
                                      cGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGca              >  1:1790356/1‑71 (MQ=255)
                                          cTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGcatcat          >  1:2112766/1‑71 (MQ=255)
                                           tGGAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCAtt         >  1:3319736/1‑71 (MQ=255)
                                             gAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTa                                    >  1:764388/1‑42 (MQ=255)
                                             gAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCTcat             <  1:1810289/65‑1 (MQ=255)
                                             gAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCATTg        >  1:3361621/1‑70 (MQ=255)
                                             gAATACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCATTg        <  1:3266152/70‑1 (MQ=255)
                                               aTACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGcatcat          >  1:1735757/1‑66 (MQ=255)
                                                tACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGAcc                           <  1:3844244/48‑1 (MQ=255)
                                                tACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGa                      <  1:1461548/53‑1 (MQ=255)
                                                tACGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACg                    <  1:3117132/55‑1 (MQ=255)
                                                  cGTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCATTGAAGTg   <  1:848303/70‑1 (MQ=255)
                                                   gTTGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGaa                        <  1:805954/48‑1 (MQ=255)
                                                    ttGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGaat                       <  1:421653/48‑2 (MQ=255)
                                                    ttGAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAg                       <  1:3978335/48‑1 (MQ=255)
                                                      gAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCATTGa       <  1:1776323/62‑1 (MQ=255)
                                                      gAAGACTCAGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCATTGAAGTGc  >  1:2529970/1‑67 (MQ=255)
                                                           ctcaGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGa                      >  1:2396744/1‑42 (MQ=255)
                                                              |                                                          
GCAGTTTCTGTCGGAATTGTGAACGGCGAAGCGGTTTGCGATCTGGAATACGTTGAAGACTCTGCCGCAGAGACCGACATGAACGTAGTGATGACCGAAGACGGGCGCATCATTGAAGTGC  >  W3110S.gb/3824348‑3824468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: