New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 70061 =42 (0.840)58 (1.480)
+CGCGTACAACT
41/80 NT 58.9% intergenic (‑13/‑326) araB/araC L‑ribulokinase/DNA‑binding transcriptional dual regulator
?W3110S.gb 236044 = 61 (1.220)intergenic (‑42/‑23) rnhA/dnaQ ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit

TAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70126‑70061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA  >  W3110S.gb/236044‑236112
                                                                  |||||||||||                                                                     
TAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATATCCGTTTTTTTGGACGCG                                                                              >  1:486660/1‑70
 AGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGT                                                                             <  1:1692343/70‑1
  GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC                                                                           <  1:2293659/71‑1
    GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA                                                                         <  1:4346116/71‑1
         CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA                                                                    <  1:3229110/71‑1
         CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA                                                                    <  1:156106/71‑1
           ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGT                                                                             >  1:3032291/1‑60
            CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC                                                                 >  1:1389245/1‑71
            CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTC                                                                 >  1:2123475/1‑71
             CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT                                                                <  1:1742363/71‑1
             CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT                                                                <  1:149210/71‑1
             CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAG                                                                   >  1:925858/1‑68
                ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG                                                               <  1:4341005/69‑1
                ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA                                                                         <  1:92848/59‑1
                  GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACA                                                            >  1:1808365/1‑70
                    TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA                                                          >  1:3273595/1‑70
                    TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA                                                          >  1:3786477/1‑70
                     TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGAC                                                             <  1:2565340/66‑1
                      TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       >  1:1407460/1‑71
                       TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       >  1:2266409/1‑70
                        TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA                                                     >  1:908424/1‑71
                        TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG                                                      <  1:3057768/70‑1
                         ATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC                                                    >  1:1485359/1‑71
                         ATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA                                                                    <  1:1051796/55‑1
                          TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACC                                                   >  1:4200448/1‑71
                          TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC                                                    <  1:2346269/70‑1
                            GCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                                 >  1:3726789/1‑71
                             CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA                                                         <  1:260532/62‑1
                             CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA                                                                    <  1:3325506/51‑1
                               ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT                                              <  1:1147895/71‑1
                                 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG                                                      <  1:2427050/61‑1
                                  CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           >  1:2184411/1‑71
                                  CTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGT                                                                             <  1:975074/37‑1
                                     TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC                                        >  1:2804196/1‑71
                                         GTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC                                        >  1:2557243/1‑67
                                          TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA                                   <  1:4484915/71‑1
                                          TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                     <  1:3898628/69‑1
                                          TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                     <  1:1367366/69‑1
                                            TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  >  1:2987471/1‑70
                                            TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  <  1:1502564/70‑1
                                              TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           >  1:3112516/1‑59
                                              TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           >  1:2589475/1‑59
                                              TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA                                                        <  1:791397/46‑1
                                               CCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA                              >  1:2948422/1‑71
                                               CCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT                                                       <  1:2855762/46‑1
                                                CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAATGCAATTACAC                             <  1:3818102/71‑1
                                                 ATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGAC                                                             <  1:421430/38‑1
                                                  TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                           <  1:1423378/71‑1
                                                  TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                           <  1:4208859/71‑1
                                                  TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA                                                     >  1:518228/1‑45
                                                  TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA                                                         <  1:632181/41‑1
                                                    CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG                                             >  1:734272/1‑51
                                                     CCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                           >  1:1435828/1‑68
                                                     CCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT                                 >  1:1438436/1‑62
                                                     CCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT                                              <  1:1988191/49‑1
                                                       GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                           >  1:249964/1‑66
                                                       GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT                                              >  1:4092824/1‑47
                                                       GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                                 >  1:1073066/1‑44
                                                       GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC                                                 >  1:2299674/1‑44
                                                        TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC                           >  1:1406805/1‑65
                                                        TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC                                        <  1:984604/52‑1
                                                        TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           >  1:4339269/1‑49
                                                        TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG                                           >  1:1591467/1‑49
                                                         TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG                    >  1:1611584/1‑71
                                                          TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG                    <  1:253959/70‑1
                                                          TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA                                               <  1:4109753/43‑1
                                                           TTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT                  >  1:2926692/1‑71
                                                           TTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                   <  1:732656/70‑1
                                                            TTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT                  >  1:2323998/1‑70
                                                            TTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG                                             >  1:4604930/1‑43
                                                              TGGACGCGTACAACTCAAGTCTGACATAAATGACCTCTATGAGCACTGCAATTACACGCCAGATCGTTCT                <  1:2455225/70‑1
                                                               GGACGCGTACAGCTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC               >  1:3031572/1‑70
                                                               GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC               <  1:765001/70‑1
                                                               GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC               <  1:316106/70‑1
                                                                 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct            <  1:1626510/71‑3
                                                                 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc             >  1:3279674/1‑69
                                                                 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT                                              >  1:4035073/1‑37
                                                                   GCGTACAACTCAAGTCTGACATAAATGCCCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA           >  1:2171781/1‑70
                                                                   GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC          <  1:171720/71‑1
                                                                     tTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc             <  1:1795620/65‑2
                                                                     GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC                                     <  1:3403598/42‑1
                                                                      TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc       <  1:4449489/71‑2
                                                                      TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT                                  <  1:1558022/44‑1
                                                                       ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc       >  1:804068/1‑69
                                                                       ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC                 >  1:17245/1‑60
                                                                        CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTATCGca      <  1:4327402/70‑3
                                                                         AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA                                   <  1:3888106/40‑1
                                                                          ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA           <  1:805762/63‑1
                                                                          ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA           <  1:2107917/63‑1
                                                                           CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA  >  1:1631163/1‑71
                                                                           CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA  >  1:2126938/1‑71
                                                                           CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC                             >  1:1029707/1‑44
                                                                            TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAAC    <  1:1323307/68‑1
                                                                            TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCT                <  1:2169759/56‑1
                                                                            TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT                  >  1:3113153/1‑54
                                                                            TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT                   <  1:323325/53‑1
                                                                  |||||||||||                                                                     
TAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/70126‑70061
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA  >  W3110S.gb/236044‑236112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.