New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 315707	NA (NA)	54 (1.080)	37/102	NT	100%	coding (654/687 nt)	ykgA	predicted DNA‑binding transcriptional regulator
	?	W3110S.gb	576911 =	0 (0.000)					coding (76/498 nt)	ybcS	predicted lysozyme

CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315638‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979                                                                                                                                             CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:4476497/71‑1            AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGT                                                           <  1:2353909/71‑1            AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGG                                                                  >  1:890523/1‑64              CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACT                                                                    >  1:2274706/1‑60              CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:3693165/58‑1               AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:4479613/57‑1                 TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAA                                                      >  1:137011/1‑71                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:2980684/70‑1                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:4000702/70‑1                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:90866/1‑53                   TGAAAACAAGAACCTCGCTTAGGACTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGT                                                        >  1:3872867/1‑67                     AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGAT                                                  >  1:2050649/1‑71                       AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGG                                                >  1:3643641/1‑71                       AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGG                                                <  1:3189727/71‑1                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCT                                             >  1:389015/1‑71                            GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGG                                           <  1:1996941/71‑1                            GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGG                                                                  >  1:2170991/1‑48                             AACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGAGCAACTGGCCCAAGTGGTAACGATGGTCTGGA                                          <  1:1178016/71‑1                               CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTC                                              <  1:3226523/65‑1                               CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:4070090/41‑1                                CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:1724338/57‑1                                 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      >  1:1445791/1‑71                                 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAG                                        <  1:735482/69‑1                                  CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTG                                     >  1:3178217/1‑71                                   GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATTGTCTGGAAGGT                                      <  1:1660522/69‑1                                   GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:882964/69‑1                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGC                                >  1:2199469/1‑71                                       AGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGC                                >  1:2365839/1‑71                                        GGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCT                               <  1:573954/71‑1                                        GGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGC                                >  1:1873075/1‑70                                         GCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAG                                        <  1:1309164/61‑1                                           CTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:4525281/1‑71                                           CTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGGCTGGAAGGT                                      <  1:3060397/61‑1                                            TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:1163739/1‑70                                            TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAG                                 <  1:1712931/65‑1                                            TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTG                                     <  1:2227227/61‑1                                            TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCT                                             <  1:3989337/53‑1                                              TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC                         >  1:1875230/1‑71                                              TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAG                                                            >  1:3732814/1‑36                                               GTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC                         >  1:4606903/1‑70                                               GTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGT                                               >  1:1164725/1‑48                                                TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGA                                          <  1:2268501/52‑1                                                TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   <  1:717122/43‑1                                                  CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATA                     >  1:3622357/1‑71                                                    TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:949839/52‑1                                                    TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGG                                           <  1:3629554/47‑1                                                     ATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCA                       >  1:4413032/1‑66                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCA                       >  1:3837782/1‑65                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGT                                               >  1:3733328/1‑41                                                       TACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:920271/1‑68                                                        ACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:305499/1‑67                                                        ACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:4243278/1‑58                                                         CGTGTGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAG                <  1:2919988/69‑1                                                           TGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAG                                 <  1:1025944/50‑1                                                             GGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATT           <  1:2340878/70‑1                                                              GTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCT                               >  1:3561464/1‑49                                                              GTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGG                                       >  1:2042739/1‑41                                                               TAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTT        <  1:331732/71‑1                                                               TAGGATCAACTGGCCCAAGTGGTAACGATGGGCTGGA                                          <  1:1425483/37‑1                                                                AGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTT        >  1:3272879/1‑70                                                                AGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCA                                  >  1:1994152/1‑44                                                                 GGATCAACTGGCCCAACTGGTAACGATGGTCTGGAAG                                        >  1:1066892/1‑37                                                                  GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCT                               <  1:4335059/45‑1                                                                  GATCAACTGGCCCAAGTGGTAAAGATGGTCTGGAAGGTGTCA                                  <  1:1952994/42‑1                                                                  GATCAACTGGCCCAAGTGCTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG      >  1:1402424/1‑70                                                                   ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAA                 >  1:21253/1‑58                                                                   ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAA                 >  1:2900107/1‑58                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:2242889/1‑70                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGAT              <  1:122505/60‑1                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAC                             >  1:1524232/1‑45                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGC                                >  1:3773632/1‑42                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGC                                >  1:3768239/1‑42                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTG                                     <  1:1849665/37‑1                                                                     CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  1:4090282/1‑71                                                                     CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  1:1757753/1‑71                                                                      AACTGGCACAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTct         >  1:603599/1‑61                                                                                                                                             CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315638‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.