New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2107348	46 (0.920)	3 (0.070)	3/92	NT	7.5%	coding (847/993 nt)	wbbI	conserved hypothetical protein
	?	W3110S.gb	= 2107390	32 (0.710)					coding (805/993 nt)	wbbI	conserved hypothetical protein

AGAAATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2107274‑2107348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCATGA  <  W3110S.gb/2107390‑2107321                                                                                                                                                     AGAAATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑A                                                                            >  1:2030334/1‑71     ATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTC                                                                        >  1:1109571/1‑71                                            ATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTCATTGTAGATAATAGAATAGGATATGC                                              <  1:2281737/58‑1                                             TTGTCATGGAGTCAACAATCCCTTGCGGATTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCA                                    <  1:29583/69‑1                                                        TCAACAATCTCTTGC‑‑ATTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAA                                   <  1:1704354/57‑1                                                                         ATTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGA                   <  1:1761196/58‑1                                                                          TTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCA     >  1:3246085/1‑71                                                                          TTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCA     >  1:4494035/1‑71                                                                          TTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATC                                     <  1:1333102/39‑1                                                                            TCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCAT    <  1:1374207/70‑1                                                                            TCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCAT    <  1:3522132/70‑1                                                                            TCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCAT    >  1:3691943/1‑70                                                                             CATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCATGA  >  1:3272950/1‑71                                                                                                                                                     AGAAATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2107274‑2107348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCATGA  <  W3110S.gb/2107390‑2107321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.