| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 39915 = | 49 (0.980) | 4 (0.090) | 3/92 | NT | 8.3% | coding (472/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | W3110S.gb | 39938 = | 44 (0.980) | coding (449/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
TGTAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGC > W3110S.gb/39846‑39983 | gggcgcgggctccgacgtgggtagcctgaaaacgacttatacccgtagaaatggtaagatttatcttaaTg < 1:1692508‑M1/2‑1 (MQ=255) tAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTgg < 1:4271093/70‑1 (MQ=255) aCAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGtaa > 1:4080977/1‑70 (MQ=255) cAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGtaat > 1:1552654/1‑70 (MQ=255) tttGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAac < 1:1725914/71‑1 (MQ=255) tCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACtt < 1:3671141/71‑1 (MQ=255) tCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACtt < 1:1982020/71‑1 (MQ=255) agaAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTtactac > 1:4235890/1‑71 (MQ=255) gaAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTtactac > 1:3744895/1‑70 (MQ=255) aGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt < 1:2831217/71‑1 (MQ=255) cctgaaaacgacttatacccgtagaaatggtaagatttatcttaaTGGTAATAAAACACTTACTACCAt > 1:115925‑M1/46‑69 (MQ=255) ccccGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATaaaa < 1:4495416/56‑1 (MQ=255) tgaaaacgacttatacccgtagaaatggtaagatttatcttaaTgg > 1:4401924‑M1/44‑46 (MQ=255) ccGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt > 1:4336027/1‑67 (MQ=255) cGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt > 1:2052212/1‑66 (MQ=255) aaaacgacttatacccgtagaaatggtaagatttatcttaaTgg < 1:1863055‑M1/3‑1 (MQ=255) aaaacgacttatacccgtagaaatggtaagatttatcttaaTGGTAATAAAACACTtac < 1:4001500‑M1/18‑1 (MQ=255) aaacgacttatacccgtagaaatggtaagatttatcttaaTgg > 1:4155411‑M1/41‑43 (MQ=255) cgcgcgCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTtac < 1:2957310/57‑1 (MQ=255) gcCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAacac < 1:3797761/48‑1 (MQ=255) gcCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAacac < 1:497896/48‑1 (MQ=255) gcCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCt > 1:3634928/1‑70 (MQ=255) cttatacccgtagaaatggtaaggtttatcttaaTGGta < 1:4418050‑M1/5‑1 (MQ=255) ttatacccgtagaaatggtaagatttatcttaaTGGTAATAAAACACTTACTACCa > 1:1129623‑M1/34‑56 (MQ=255) ttatacccgtagaaatggtaagatttatcttaaTGGTAATAAAACACTTACTACCa > 1:3829255‑M1/34‑56 (MQ=255) ccATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTa < 1:3018168/71‑1 (MQ=255) ccATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTa < 1:1314130/71‑1 (MQ=255) cATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTaa > 1:608417/1‑59 (MQ=255) cATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:304979/1‑71 (MQ=255) aTCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:4612820/1‑70 (MQ=255) aTCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:4339495/1‑70 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGtaataa < 1:1162186/39‑1 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:2234883/1‑69 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:4105214/1‑71 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:3589858/1‑71 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:1453891/1‑71 (MQ=255) accacGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAtt > 1:4481212/1‑71 (MQ=255) ccacGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATaa < 1:3672003/59‑1 (MQ=255) cacGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:4312013/1‑71 (MQ=255) acGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:2053991/1‑70 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAt > 1:3415085/1‑66 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTa > 1:3384904/1‑71 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTa > 1:96179/1‑71 (MQ=255) aTGTACGGGGTGTAGGCGCTGCTGGTAATAAAacac < 1:2081423/36‑1 (MQ=255) tACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:3534057/1‑58 (MQ=255) tACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGt < 1:3194909/71‑1 (MQ=255) cGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGtat < 1:581549/71‑1 (MQ=255) cGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGtat < 1:2238544/71‑1 (MQ=255) cGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGtat < 1:4386230/71‑1 (MQ=255) ggTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAg < 1:3953924/71‑1 (MQ=255) gtgtAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATaa < 1:554921/69‑1 (MQ=255) tAGGCGCTGCTGGTAATAAAACACTTAATACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGt < 1:2532777/71‑1 (MQ=255) ggCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtt < 1:4317787/70‑1 (MQ=255) gcgcTGCTGGTGATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtt < 1:2796667/69‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:4348925/71‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:3726406/71‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt > 1:2320017/1‑71 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:825165/71‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:183275/71‑1 (MQ=255) gctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:1402226/1‑47 (MQ=255) gctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:2958107/1‑47 (MQ=255) gctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGc > 1:1632159/1‑71 (MQ=255) ctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAttt > 1:527988/1‑45 (MQ=255) TGGTAATAAAACACTTACTACCATTAAGATAAATc > 1:3986228‑M1/1‑35 (MQ=255) TGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTc < 1:93343‑M1/65‑1 (MQ=255) | TGTAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGC > W3110S.gb/39846‑39983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |