| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 50 (1.000) | 25 (1.060) +TTTAATATCAGTAAACCGGACATAACC |
21/48 | NT | 47.6% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 67 (1.340) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 132 total aligned reads displayed.
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236729‑236868 | gaTTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaaa < 1:106274/71‑1 (MQ=255)gaTTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa > 1:1300351/1‑70 (MQ=255) aTTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtt > 1:2957679‑M1/1‑69 (MQ=255) tGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt > 1:3698044/1‑69 (MQ=255) gCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttta < 1:893105‑M1/70‑5 (MQ=255) gCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATAc < 1:323071/70‑1 (MQ=255) cAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa < 1:62240/65‑1 (MQ=255) cTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat > 1:1702013‑M1/1‑62 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGa < 1:401150/69‑1 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGa > 1:3365878/1‑69 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtt > 1:1069598‑M1/1‑57 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAt < 1:2943075‑M1/58‑2 (MQ=255) aGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaac > 1:4291223‑M1/1‑55 (MQ=255) aGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaac < 1:944332‑M1/71‑17 (MQ=255) gCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGgcgc < 1:3029269/71‑1 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg < 1:1543610‑M1/71‑19 (MQ=255) cccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg > 1:2509541‑M1/1‑53 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg > 1:3788707‑M1/1‑52 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg > 1:4458574‑M1/1‑52 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgt > 1:4221719/1‑60 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGgcgc > 1:2038204/1‑69 (MQ=255) cGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTa > 1:3393555/1‑70 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCTAGCATAAATACCTGTGAAAGGCGCTaaa < 1:4282854/71‑1 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca > 1:1583882‑M1/1‑50 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaat > 1:2083653‑M1/1‑50 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGaa > 1:4361982/1‑61 (MQ=255) gTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:3281717/71‑1 (MQ=255) ctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaaa > 1:1783905/1‑49 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:3150157‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:2788842‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:4248676/1‑70 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAAt > 1:947336/1‑69 (MQ=255) tCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataac < 1:1529842‑M1/69‑27 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa < 1:786954/41‑1 (MQ=255) ggTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgtg < 1:4237415/49‑1 (MQ=255) gTGCAGAAGAAAGGCTGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg > 1:295239‑M1/1‑39 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaa > 1:538639/1‑39 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataaccca < 1:871920‑M1/68‑30 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCtgtg < 1:1691159/48‑1 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAg < 1:1353560/65‑1 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGa < 1:211386/68‑1 (MQ=255) tGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGgcgc < 1:3291668/55‑1 (MQ=255) tGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTg > 1:3410353/1‑71 (MQ=255) gCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatg > 1:4087800‑M1/1‑37 (MQ=255) cAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:4279305‑M1/39‑4 (MQ=255) cAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTggg > 1:349143/1‑71 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGa > 1:1878239/1‑63 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGc > 1:2619597/1‑70 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:4080595‑M1/36‑4 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa < 1:1187677/56‑1 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:4128600‑M1/71‑40 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtt > 1:2479233/1‑71 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtt > 1:3499607/1‑71 (MQ=255) aaaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACt > 1:2026392/1‑61 (MQ=255) aaaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAttt < 1:4280558/71‑1 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcg > 1:4479179‑M1/1‑29 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTggg > 1:532095/1‑64 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAttt < 1:3164041/70‑1 (MQ=255) aGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAttttt > 1:2882155/1‑71 (MQ=255) ggCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca < 1:4331241‑M1/37‑11 (MQ=255) gCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca > 1:570881‑M1/1‑26 (MQ=255) cGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatc > 1:3104962‑M1/1‑25 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctt > 1:1245216‑M1/1‑24 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctt < 1:2785613‑M1/71‑48 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTg < 1:3619872/56‑1 (MQ=255) aGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttt < 1:3195861‑M1/70‑50 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttt > 1:1947785‑M1/1‑19 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttt < 1:3071442‑M1/68‑50 (MQ=255) ttGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTg < 1:4604704/52‑1 (MQ=255) tGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg > 1:2164647‑M1/1‑18 (MQ=255) tGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:509783/1‑41 (MQ=255) tGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAAc < 1:1382025/70‑1 (MQ=255) ccTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaa < 1:4533841‑M1/70‑55 (MQ=255) ccTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg > 1:3257766‑M1/1‑16 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtg > 1:2626801‑M1/1‑14 (MQ=255) tctGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:4607604/35‑1 (MQ=255) ctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgg > 1:1896572‑M1/1‑13 (MQ=255) ctGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtttt < 1:2147445/55‑1 (MQ=255) atgGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatc > 1:1026041‑M1/2‑13 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:2916487‑M1/69‑60 (MQ=255) cGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcag < 1:3585205‑M1/71‑63 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagg < 1:859340‑M1/71‑64 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagg < 1:1641950‑M1/71‑64 (MQ=255) gAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggca > 1:440067‑M1/1‑8 (MQ=255) gAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGa < 1:466160/71‑1 (MQ=255) gCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGAt > 1:169231/1‑70 (MQ=255) cATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttt < 1:717936‑M1/55‑51 (MQ=255) aTAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggc < 1:1351622‑M1/71‑68 (MQ=255) aTAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcaggggg > 1:4011339‑M1/1‑4 (MQ=255) aTAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGAt > 1:2632123/1‑68 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga > 1:3876160‑M1/1‑3 (MQ=255) tAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATgaga < 1:2767885/71‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:3497995‑M1/1‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:2522353‑M1/1‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:2867027‑M1/1‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagt > 1:1779460‑M1/1‑1 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaa > 1:3613557‑M1/1‑1 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtt > 1:1078140/1‑41 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGaaa < 1:3699828/71‑1 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGaa > 1:2236588/1‑70 (MQ=255) | GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > W3110S.gb/236729‑236868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |