| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 42 (0.840) | 85 (1.810) +TCA |
49/96 | NT | 81.1% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 248 total aligned reads displayed.
GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314384‑314521 | cactttctgcccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgat < 1:3114042‑M1/1‑1 (MQ=255) agatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt > 1:1737706‑M1/69‑71 (MQ=255) agatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt < 1:1583866‑M1/3‑1 (MQ=255) actttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCt > 1:2310282‑M1/69‑71 (MQ=255) tctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAcc < 1:3130295‑M1/7‑1 (MQ=255) tctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAcc < 1:326637‑M1/7‑1 (MQ=255) gTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc < 1:740349/71‑1 (MQ=255) aaGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCtt > 1:2114568/1‑65 (MQ=255) cttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAcc > 1:3845818‑M1/59‑65 (MQ=255) cgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATa > 1:1002278‑M1/56‑70 (MQ=255) aggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc < 1:364818‑M1/11‑1 (MQ=255) aggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:1372631‑M1/16‑1 (MQ=255) gcgcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGt < 1:4532014/71‑1 (MQ=255) cagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGa < 1:3999554‑M1/20‑1 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:2916844‑M1/20‑1 (MQ=255) agagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTgg > 1:2946166‑M1/51‑69 (MQ=255) aGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca < 1:2399293/71‑1 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAc > 1:1223594/1‑54 (MQ=255) agatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac > 1:4490030‑M1/49‑71 (MQ=255) ccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGacac > 1:4034399‑M1/48‑70 (MQ=255) aGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGa < 1:2215662/65‑1 (MQ=255) aGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcgcg < 1:3899114/71‑1 (MQ=255) cttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGacac > 1:3251232‑M1/44‑66 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:2759823‑M1/28‑1 (MQ=255) taaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:4352911‑M1/42‑70 (MQ=255) taaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:2530903‑M1/42‑71 (MQ=255) gctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:2871438‑M1/40‑70 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTgg < 1:3680465/58‑1 (MQ=255) accatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:898424‑M1/40‑70 (MQ=255) accatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:3044669‑M1/40‑70 (MQ=255) accatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:1932590‑M1/40‑70 (MQ=255) ctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:2367209‑M1/39‑71 (MQ=255) cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:3135421/71‑1 (MQ=255) tgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:1305451‑M1/32‑1 (MQ=255) catcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATa > 1:3412428‑M1/38‑52 (MQ=255) aTGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTg < 1:1467164/71‑1 (MQ=255) tcgttctggatagcagagaagtgtacgaacactgat < 1:3773930‑M1/1‑1 (MQ=255) tcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:849537‑M1/33‑1 (MQ=255) tcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:2417949‑M1/36‑1 (MQ=255) cttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:2176680‑M1/13‑1 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCgg > 1:3797959/1‑61 (MQ=255) gttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:2795545‑M1/34‑71 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:4498471/61‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2663502/71‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:1284522‑M1/40‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:794531‑M1/32‑70 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa < 1:4069221/45‑1 (MQ=255) ctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAg < 1:2826204‑M1/16‑1 (MQ=255) cacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg < 1:1251354‑M1/18‑1 (MQ=255) gatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:568842‑M1/28‑71 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:300645‑M1/44‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:2953740/61‑1 (MQ=255) agcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:4510906‑M1/25‑62 (MQ=255) agcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:3544796‑M1/46‑1 (MQ=255) cagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:2029719‑M1/48‑1 (MQ=255) cagagaagtgtacgaacactgaTCTTACCCAGCaa > 1:4152300‑M1/23‑35 (MQ=255) cagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc > 1:673586‑M1/23‑71 (MQ=255) agcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:2491619‑M1/48‑1 (MQ=255) gagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:2003969‑M1/21‑71 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:3778844/71‑1 (MQ=255) agaagtgtacgaacactgaTCTTACCCAGCAATAGTGGaca < 1:3309464‑M1/22‑1 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:4424166‑M1/31‑1 (MQ=255) gACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:3470392/64‑1 (MQ=255) aggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc > 1:1840189‑M1/18‑45 (MQ=255) aagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:510293‑M1/33‑1 (MQ=255) aagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1017579‑M1/18‑61 (MQ=255) aCCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTg < 1:3013890/51‑1 (MQ=255) aCCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg > 1:3210806/1‑71 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:1339107/71‑1 (MQ=255) tgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:3502826‑M1/15‑47 (MQ=255) tgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa > 1:4587387‑M1/15‑71 (MQ=255) gtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc < 1:1449198‑M1/58‑1 (MQ=255) tacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:2884924‑M1/13‑44 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:1865652‑M1/13‑60 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:268828‑M1/32‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGc < 1:12028/38‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:2087305/1‑43 (MQ=255) gaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:495649‑M1/32‑1 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:2542070/69‑1 (MQ=255) tcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:4247603‑M1/32‑1 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:1050442‑M1/64‑1 (MQ=255) cactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:576301‑M1/64‑1 (MQ=255) aGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca > 1:1649464/1‑56 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:4345860‑M1/6‑45 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:704695‑M1/6‑56 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:1155676‑M1/6‑57 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1660366‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:1964418‑M1/5‑43 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:4420630‑M1/5‑57 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:1780729‑M1/36‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:3602837‑M1/4‑62 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:2595099‑M1/63‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg < 1:3062334‑M1/65‑1 (MQ=255) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:1113784/1‑67 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:4113681/1‑70 (MQ=35) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:4518333‑M1/3‑39 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:3382961‑M1/68‑1 (MQ=255) ctctTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:4314222/41‑1 (MQ=32) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1766403‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:4392102‑M1/2‑69 (MQ=255) | GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314384‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |