| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 49 (0.980) | 81 (1.620) | 46/102 | NT | 61.6% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 52 (1.040) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 165 total aligned reads displayed.
TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713884‑714024 | tGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:757625/71‑1 (MQ=255) aTCGAAGACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTATGAGGAACTATCTaaaa > 1:1218788/1‑71 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc < 1:1462881/71‑1 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:3329254/70‑1 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg < 1:861705/71‑1 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatta < 1:194292‑M1/71‑13 (MQ=255) catGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:3060807‑M1/1‑58 (MQ=255) catGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:3380218‑M1/1‑58 (MQ=255) catGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:3385648‑M1/1‑58 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:2453430/1‑70 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:2356101/1‑70 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:1236310‑M1/71‑16 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:1298489‑M1/71‑16 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAATGTTGCAgaca > 1:3211576/1‑69 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa > 1:948635/1‑65 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:4576283/1‑69 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagg < 1:2684055/71‑1 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag < 1:3421980/70‑1 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgagg < 1:3719899‑M1/71‑19 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgagg < 1:3758460‑M1/71‑19 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt < 1:2380649‑M1/71‑20 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcgg < 1:2546687‑M1/55‑4 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatga > 1:3751393‑M1/1‑51 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:1159327/1‑70 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:2175741/1‑70 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat < 1:1568847‑M1/71‑23 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca < 1:1255875‑M1/70‑22 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgagggca < 1:938268‑M1/70‑22 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:4286928‑M1/1‑47 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag > 1:203440/1‑70 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:694401‑M1/1‑46 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa < 1:3035231/71‑1 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaa > 1:4361060/1‑45 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:2328722‑M1/71‑28 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:3094183‑M1/55‑12 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATg < 1:3928446/71‑1 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:2516511‑M1/1‑42 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:109949‑M1/70‑32 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:1730587‑M1/70‑32 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:2690486‑M1/70‑32 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:4201249‑M1/71‑34 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:889406‑M1/1‑37 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatga > 1:3963498‑M1/1‑36 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag < 1:634946/58‑1 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagt > 1:821421‑M1/1‑34 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:4142288/71‑1 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGtt < 1:447402/39‑1 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:4212412/53‑1 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:4188752‑M1/1‑31 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:1433384/1‑50 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc > 1:2273602/1‑71 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:3113781‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatga > 1:1625844‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACGAAGGACAAAGCaa > 1:2173162/1‑54 (MQ=255) attgaGAAGGTTTGCTGAACTATCTAAcggctgaaatta < 1:358853‑M1/39‑13 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttt < 1:2395883‑M1/70‑44 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaatta < 1:3344297‑M1/39‑13 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:1420922‑M1/1‑26 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag > 1:2906817/1‑42 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:2574412‑M1/1‑25 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGAGAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:4559766/70‑1 (MQ=255) agaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAg < 1:3658880/70‑1 (MQ=255) aaGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg > 1:3494048/1‑69 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccat > 1:1903399‑M1/1‑20 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:4257098‑M1/1‑20 (MQ=255) aGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:1672205/71‑1 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccat > 1:4379316‑M1/1‑19 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:2437632‑M1/1‑19 (MQ=255) ggTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCaa > 1:3500019/1‑71 (MQ=255) ggTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCaa > 1:3395335/1‑71 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg < 1:4487461‑M1/71‑54 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:340439‑M1/60‑43 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:4484897‑M1/1‑16 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATg > 1:80271/1‑44 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:391722‑M1/1‑15 (MQ=255) tGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:4006766/35‑1 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCaa < 1:1509995/47‑1 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg > 1:1051473/1‑63 (MQ=255) gCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaac > 1:1340685‑M1/1‑14 (MQ=255) ggAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaa < 1:3017935‑M1/71‑60 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatg > 1:666862‑M1/1‑10 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacacaaatggatagttcgtttacgcccattgaacaaatg > 1:2946988‑M1/1‑10 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagt > 1:275200‑M1/1‑8 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:1022129/1‑69 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaa < 1:3695543‑M1/70‑66 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATc > 1:1527734/1‑39 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGc > 1:609928/1‑50 (MQ=255) cTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaa > 1:2279549‑M1/1‑4 (MQ=255) cTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:2560316‑M1/1‑4 (MQ=255) cTAAcggctgaaattaatgaggtcatacacaaatggatagttcgtttacgcccattgaacaaatgctaaaa > 1:4573175‑M1/1‑4 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAAt > 1:4041730/1‑37 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:1440290/43‑1 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt > 1:59600‑M1/1‑2 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaa > 1:3591300‑M1/1‑2 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:1099220‑M1/1‑2 (MQ=255) aaaaCGTTGCAGACAAAGGACAAAGCAATGGCAAt > 1:2850881/1‑35 (MQ=255) aaaaCGTTGCAGACAAAGGACAAAGCAATGGCAAt > 1:487320/1‑35 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt < 1:1988786‑M1/70‑70 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt < 1:2065623‑M1/70‑70 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAAc > 1:222863/1‑54 (MQ=255) | TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713884‑714024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |