| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2728290 | 0 (0.000) | 3 (0.070) | 3/92 | NT | 100% | noncoding (1524/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | W3110S.gb | = 2728302 | NA (NA) | noncoding (1512/1542 nt) | rrsG | 16S ribosomal RNA | |||||
CACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC > W3110S.gb/2728220‑2728360 | cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG > 1:4360207‑M1/1‑71 (MQ=255) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACTCTTCTTTAAGGTAAGGAGGTGATCCAACCG > 1:2098559‑M1/1‑70 (MQ=255) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc < 1:3355601/71‑1 (MQ=32) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc < 1:2880951/71‑1 (MQ=32) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc < 1:118440/71‑1 (MQ=32) aCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG > 1:4343965‑M1/1‑70 (MQ=255) cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCa < 1:778370/71‑1 (MQ=31) cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCa < 1:504491/71‑1 (MQ=31) aGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacct > 1:159239‑M1/1‑60 (MQ=255) cGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggttgg > 1:1614640‑M1/1‑32 (MQ=255) ggtaaggAGGTGATCCAACCGtaggggaacctgcgg > 1:620408‑M1/1‑21 (MQ=255) ttaccGtaggggaacctgcggttggagcacctccttaccttaaagaagcgtactt < 1:105881‑M1/53‑50 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcaca > 1:1251066‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcaca > 1:2897645‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaag < 1:2048216‑M1/44‑40 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagat > 1:4476615‑M1/1‑4 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagat > 1:3131464‑M1/1‑4 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagat > 1:2914611‑M1/1‑4 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcac < 1:1988881‑M1/65‑62 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcg < 1:2056641‑M1/48‑45 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaag < 1:3497325‑M1/43‑40 (MQ=255) ccGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagatt < 1:3534121‑M1/71‑69 (MQ=255) ccGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagatt < 1:4001241‑M1/71‑69 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattg > 1:4469391‑M1/1‑2 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattg < 1:2454‑M1/71‑70 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttg < 1:11212‑M1/53‑52 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttg < 1:3226658‑M1/53‑52 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagc > 1:1624381‑M1/1‑2 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagc > 1:1294119‑M1/1‑2 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaa > 1:4501514‑M1/1‑2 (MQ=255) gtaggggaacctgcggttggctcacctccttaccttaaagaagcgtactttgcagtgctcacacagattg > 1:2579480‑M1/1‑1 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgt < 1:2443763‑M1/71‑71 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgt < 1:1871986‑M1/71‑71 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctca > 1:2623552‑M1/1‑1 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcag > 1:892549‑M1/1‑1 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaag > 1:39689‑M1/1‑1 (MQ=255) | CACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC > W3110S.gb/2728220‑2728360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |