| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 83 (1.800) | 48/94 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
Only 100 of 106 total aligned reads displayed.
TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > W3110S.gb/3750522‑3750662 | tCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA < 1:2009476‑M1/71‑1 (MQ=255) cccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA > 1:3517515‑M1/1‑70 (MQ=255) ccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaa > 1:2338523‑M1/1‑69 (MQ=255) gtgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:4028823‑M1/1‑66 (MQ=255) gtgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:3426768‑M1/1‑66 (MQ=255) tatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:1122283‑M1/1‑61 (MQ=255) tACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:2013428‑M1/70‑13 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaa > 1:2743518‑M1/1‑57 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaa > 1:3861706‑M1/1‑57 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaa > 1:3390448‑M1/1‑57 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataa < 1:3653786‑M1/70‑14 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaa < 1:3035235‑M1/66‑10 (MQ=255) cATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:642725‑M1/1‑56 (MQ=255) cATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac < 1:4069775‑M1/71‑16 (MQ=255) cATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:865746‑M1/1‑56 (MQ=255) tCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:3707520‑M1/1‑54 (MQ=255) cTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:1930033‑M1/1‑53 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:977121‑M1/1‑52 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagaga < 1:3390622‑M1/71‑22 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagag < 1:11229‑M1/70‑21 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac < 1:276608‑M1/62‑16 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac < 1:2396031‑M1/62‑16 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:3028861‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:3646125‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:3651251‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac < 1:2555570‑M1/70‑26 (MQ=255) cGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacct < 1:3633811‑M1/71‑28 (MQ=255) gATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaa > 1:4203111‑M1/1‑43 (MQ=255) gATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa > 1:2358608‑M1/1‑43 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac > 1:4350271‑M1/1‑42 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 1:2996898‑M1/1‑42 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:4541906‑M1/49‑8 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:3118907‑M1/49‑8 (MQ=255) ttAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttg > 1:207552‑M1/1‑41 (MQ=255) ttAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttg > 1:3484837‑M1/1‑41 (MQ=255) ttAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacct > 1:1759391‑M1/1‑41 (MQ=255) ttAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa > 1:4580784‑M1/1‑41 (MQ=255) tAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 1:1476927‑M1/1‑40 (MQ=255) aaTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaaca < 1:1736281‑M1/43‑5 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:4317365‑M1/71‑34 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:3151573‑M1/45‑8 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:2802055‑M1/71‑35 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaag > 1:4011678‑M1/1‑35 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:3864830‑M1/70‑36 (MQ=255) cAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaag > 1:1108864‑M1/1‑32 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:1800864‑M1/71‑41 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:3680639‑M1/71‑41 (MQ=255) gATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaa < 1:3582362‑M1/71‑42 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 1:2938702‑M1/1‑29 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 1:3422825‑M1/1‑29 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa > 1:467529‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctt < 1:1804259‑M1/55‑29 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta < 1:620855‑M1/71‑46 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:1088045‑M1/70‑45 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:1111345‑M1/70‑45 (MQ=255) tatatGCAAGCAACATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:572764‑M1/59‑34 (MQ=255) atatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgc > 1:4608916‑M1/1‑25 (MQ=255) atatGCAAGCACCATCATTCACTAAaacaagtaaataaacgagagatgacctttgc > 1:2832406‑M1/1‑25 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaa < 1:3065148‑M1/70‑47 (MQ=255) tatGCAAGCACCAACATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta < 1:4050517‑M1/69‑46 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaac < 1:3791019‑M1/38‑16 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat < 1:239337‑M1/71‑50 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat < 1:2292297‑M1/71‑50 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:4502909‑M1/1‑22 (MQ=255) tGCAAGCACCATCATATACTAAaacaagtaaataa > 1:1619522‑M1/1‑22 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata > 1:1111248‑M1/1‑21 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata > 1:773728‑M1/1‑21 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:3107890‑M1/61‑41 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:1607922‑M1/61‑41 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgaccttt > 1:1414686‑M1/1‑21 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaacgaga < 1:838351‑M1/40‑20 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatat < 1:3320225‑M1/71‑52 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata < 1:2972117‑M1/70‑51 (MQ=255) aaGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaatata < 1:2029183‑M1/69‑51 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:1255285‑M1/62‑45 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgc > 1:4281967‑M1/1‑17 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgac > 1:2079325‑M1/1‑17 (MQ=255) cACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagc > 1:1428543‑M1/1‑16 (MQ=255) catcatTAACTAAaacaagtaaataaacgagagatgacctt > 1:3966645‑M1/1‑13 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaaca < 1:2006768‑M1/71‑60 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:4356593‑M1/47‑36 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgaccttt > 1:3677737‑M1/1‑12 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaaca > 1:3651447‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatat > 1:1532919‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatat > 1:185490‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:128706‑M1/44‑34 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaa > 1:726938‑M1/1‑9 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggca > 1:4311698‑M1/1‑9 (MQ=255) ttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaaca < 1:3959005‑M1/70‑64 (MQ=255) ttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:3376010‑M1/1‑7 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaataga < 1:932654‑M1/70‑66 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:243221‑M1/1‑5 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagat > 1:1073816‑M1/1‑4 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaat < 1:456554‑M1/66‑63 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3624517‑M1/37‑35 (MQ=255) aaaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatag > 1:767600‑M1/1‑2 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:4411101‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaa > 1:1090452‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaagg < 1:3040897‑M1/38‑38 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaag < 1:187718‑M1/37‑37 (MQ=255) | TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > W3110S.gb/3750522‑3750662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |