New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 4058811 =56 (1.120)3 (0.070) 3/90 NT 5.7% coding (469/489 nt) yhhY predicted acetyltransferase
?W3110S.gb 4058829 = 50 (1.130)coding (451/489 nt) yhhY predicted acetyltransferase

TCGATTTTGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAGCCGTA  >  W3110S.gb/4058743‑4058880
                                                                    |                                                                     
tCGATTTTGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataat                                                                     <  1:977235/71‑1 (MQ=255)
tCGATTTTGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataa                                                                      <  1:1122602/70‑1 (MQ=255)
tCGATTTTGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataa                                                                      <  1:2675547/70‑1 (MQ=255)
 aaggtctataaaaaatacggctttgaaattgaagggacaggtaagaagtacgcattgcgtaatggtgAat                                                                     >  1:2422805‑M1/68‑70 (MQ=255)
  gATTTTGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataat                                                                     >  1:822724/1‑69 (MQ=255)
   aTTTTGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAatatt                                                                  <  1:2528036/71‑2 (MQ=255)
      ttGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCAt                                                               >  1:1863063/1‑71 (MQ=255)
        gAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATc                                                              <  1:833643/70‑1 (MQ=255)
        gAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATc                                                              <  1:4145565/70‑1 (MQ=255)
         aaTGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGa                                                            >  1:3981137/1‑71 (MQ=255)
          aTGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATc                                                              <  1:3468075/68‑1 (MQ=255)
          aTGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGAc                                                           <  1:4129974/71‑1 (MQ=255)
            gACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataat                                                                     <  1:4020716/59‑1 (MQ=255)
             acacCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataat                                                                     >  1:1302753/1‑58 (MQ=255)
             acacCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACata                                                        >  1:2492540/1‑71 (MQ=255)
                 ccTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCg                                                             <  1:786195/62‑1 (MQ=255)
                  cTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCAc                                                   <  1:436649/71‑1 (MQ=255)
                    ttttCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataata                                                                    >  1:565238/1‑52 (MQ=255)
                    gctttgaaattgaagggactggtaagaagtacgcattgcgtaatggtgAatat                                                                   >  1:1296047‑M1/49‑53 (MQ=255)
                      tttgaaattgaagggactggtaagaagtacgcattgcgtaatggtgAatat                                                                   >  1:1963666‑M1/47‑51 (MQ=255)
                       ttgaaattgaagggactggtaagaagtacgcattgcgtaatggtgAata                                                                    <  1:678798‑M1/4‑1 (MQ=255)
                        ccATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCg                                                             <  1:803209/55‑1 (MQ=255)
                          aTCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGc                                           <  1:2394498/71‑1 (MQ=255)
                           tctcAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCCCCATTACGc                                           >  1:530632/1‑70 (MQ=255)
                            attgaagggactggtaagaagtacgcattgcgtaatggtgAATATGCATCGACatat                                                       >  1:105594‑M1/41‑57 (MQ=255)
                              cAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATataa                                                                      <  1:4522338/40‑1 (MQ=255)
                              cAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATg                                       >  1:73763/1‑71 (MQ=255)
                               gaagggactggtaagaagtacgcattgcgtaatggtgAata                                                                    <  1:421768‑M1/4‑1 (MQ=255)
                               aGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACa                                                          >  1:2860297/1‑51 (MQ=255)
                               aGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCaa                                         <  1:132544/68‑1 (MQ=255)
                               aGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATAGACa                                                          >  1:1683337/1‑51 (MQ=255)
                               aGAAAAAGGGCACTATCTTACTTAACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAAt                                        >  1:805822/1‑69 (MQ=255)
                                gAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTa                                              >  1:2670182/1‑62 (MQ=255)
                                gAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCg                                     >  1:2365331/1‑71 (MQ=255)
                                 agggactggtaagaagtacgcattgcgtaatggtgAatat                                                                   <  1:3027853‑M1/5‑1 (MQ=255)
                                 agggactggtaagaagtacgcattgcgtaatggtgAATATGCATCGACATATTc                                                     <  1:144915‑M1/19‑1 (MQ=255)
                                 aaaaaGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCg                                     >  1:3256202/1‑70 (MQ=255)
                                 aaaaaGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCg                                     <  1:2844694/70‑1 (MQ=255)
                                   aaaGGGCACTATCTTACTTCACCCGCGCCATataat                                                                     <  1:4121795/36‑1 (MQ=255)
                                   aaaGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACata                                                        >  1:4094511/1‑49 (MQ=255)
                                   aaaGGGAACTATCTGACTTCACCCGCGCCATATAATATGCATCGACata                                                        >  1:1550402/1‑49 (MQ=255)
                                       ggCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCaa                                         >  1:1659582/1‑60 (MQ=255)
                                         cACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTActtctt                             >  1:1569429/1‑70 (MQ=255)
                                         cACTATCTTACTTCACCCGCCCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTActtctt                             >  1:2514921/1‑70 (MQ=255)
                                          aCTATCTTACTTCACCCGCGCCATATAATATGCATc                                                              <  1:4160473/36‑1 (MQ=255)
                                          aCTATCTTACTTCACCCGCGCCATATAATATGCATc                                                              <  1:696576/36‑1 (MQ=255)
                                          aCTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTAc                           >  1:2172893/1‑71 (MQ=255)
                                            tATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGc                                           <  1:459839/53‑1 (MQ=255)
                                            tATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGt                                    <  1:349461/60‑1 (MQ=255)
                                            tATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGt                                    <  1:77051/60‑1 (MQ=255)
                                             aTCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTa                                              >  1:887525/1‑49 (MQ=255)
                                             aTCTTACTTCACCCGCGCCATATAATATGCATCGACATAATCACCATTa                                              >  1:1821622/1‑49 (MQ=255)
                                              tCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTa                                              >  1:4477734/1‑48 (MQ=255)
                                              tCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCaa                                         >  1:1504120/1‑53 (MQ=255)
                                              tCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGt                       >  1:2179800/1‑71 (MQ=255)
                                               cTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTc                      >  1:3774229/1‑71 (MQ=255)
                                               agtacgcattgcgtaatggtgAATATGCATCGACata                                                        <  1:151060‑M1/16‑1 (MQ=255)
                                                ttACTTCACCCGCGCCATATAATATGCATCGACatat                                                       <  1:4040121/37‑1 (MQ=255)
                                                  aCTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGt                       <  1:3170546/67‑1 (MQ=255)
                                                  aCTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGt                       <  1:2231330/67‑1 (MQ=255)
                                                   cTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCtt                  <  1:1024930/71‑1 (MQ=255)
                                                    ttCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCa                                          <  1:2309395/46‑1 (MQ=255)
                                                    ttCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCtt                  >  1:3152287/1‑70 (MQ=255)
                                                      cACCCGCGCCATATAATATGCATCGACATATTCACCa                                                 >  1:4282985/1‑37 (MQ=255)
                                                      cACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCaa                                         >  1:4525494/1‑45 (MQ=255)
                                                      cACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTc                 <  1:625446/69‑1 (MQ=255)
                                                      cACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTc                 <  1:4292749/69‑1 (MQ=255)
                                                          cgcgCCATATAATATGCATCGACATATTCACCATTACGCaa                                         <  1:1620608/41‑1 (MQ=255)
                                                          cgcgCCATATAATATGCATCGACATATTCACCATTACGCaa                                         <  1:4282343/41‑1 (MQ=255)
                                                           gcgcCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCa          <  1:1529450/71‑1 (MQ=255)
                                                             gcCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCtt                  >  1:538621/1‑61 (MQ=255)
                                                             gcCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAAtt             >  1:1844614/1‑66 (MQ=255)
                                                              ccATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAg       <  1:1423864/71‑1 (MQ=255)
                                                              ccATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAg       <  1:2925947/71‑1 (MQ=255)
                                                              ccATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAg       <  1:1418613/71‑1 (MQ=255)
                                                               cATATAATATGCATCGACATATTCACCATTACGCaa                                         >  1:262500/1‑36 (MQ=255)
                                                                atatAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCt                   <  1:2976806/57‑1 (MQ=255)
                                                                atatAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAGcc     >  1:1229654/1‑71 (MQ=255)
                                                                 tataATATGCATCGACATATTCACCATTACGCAATGCGTAtttct                              <  1:3567461/45‑1 (MQ=255)
                                                                 tataATATGCATCGACATATTCACCATTACGCAATGCGTActtct                              <  1:3497241/45‑1 (MQ=255)
                                                                 tataATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTAc                           <  1:4083672/48‑1 (MQ=255)
                                                                 tataATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAGCCg    >  1:1798699/1‑71 (MQ=255)
                                                                 tataATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAGCCg    >  1:1324636/1‑71 (MQ=255)
                                                                  ataataTGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAGCCg    >  1:2467345/1‑70 (MQ=255)
                                                                  ataataTGCATCGACATATTCACCATTACGCAATGCATACTTCTTAcc                          >  1:648310/1‑48 (MQ=255)
                                                                   taataTGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAGCCGTa  >  1:3931076/1‑71 (MQ=255)
                                                                    AATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTc                 >  1:2166747‑M1/1‑55 (MQ=255)
                                                                    |                                                                     
TCGATTTTGAATGACACCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTCTTACCAGTCCCTTCAATTTCAAAGCCGTA  >  W3110S.gb/4058743‑4058880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.