| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4366252 | 44 (0.880) | 3 (0.070) | 3/94 | NT | 7.4% | coding (363/1539 nt) | cadC | DNA‑binding transcriptional activator |
| ? | W3110S.gb | = 4366279 | 34 (0.740) | coding (336/1539 nt) | cadC | DNA‑binding transcriptional activator | |||||
TTGCGGTGTTTTGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTAT > W3110S.gb/4366185‑4366322 | ttGCGGTGTTTTGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGa < 1:1051234/71‑1 (MQ=255)ttGCGGTGTTTTGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGG < 1:4141805‑M1/68‑1 (MQ=255) gCGGTGTTTTGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAg < 1:3798841/70‑1 (MQ=255) ttttGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAg < 1:1435737/70‑1 (MQ=255) tttGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGa < 1:888783/70‑1 (MQ=255) ttGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGa > 1:1622704/1‑69 (MQ=255) tGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATa < 1:3553044/70‑1 (MQ=255) aTGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCa < 1:2783611/70‑1 (MQ=255) tGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGa > 1:876791/1‑56 (MQ=255) tGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGaa < 1:2395723/62‑1 (MQ=255) tAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGaa < 1:1772749/59‑1 (MQ=255) aaGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCattatt < 1:1261818/70‑1 (MQ=255) aaGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCattatt < 1:4411768/70‑1 (MQ=255) aGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAgggg < 1:100149/49‑1 (MQ=255) aGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTc > 1:1360575/1‑71 (MQ=255) gACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTca < 1:3811791/71‑2 (MQ=255) cTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGa < 1:4247414/53‑1 (MQ=255) cTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGa < 1:4154019/53‑1 (MQ=255) cTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCctc > 1:4558937/1‑71 (MQ=255) tgGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCTAAGATAGCATTATTTCctct < 1:1662460/69‑1 (MQ=255) ggagggagAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTccc > 1:2571735‑M2/1‑67 (MQ=255) gagggagAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCatt < 1:2881755/57‑1 (MQ=255) gagggagAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCctc > 1:1953749/1‑71 (MQ=255) ggagAATCTGTGGCAGGAACCGCCTCTGGTATAGGGagaggaaataatgctatcttcgcctccccctatac < 1:2602076‑M1/71‑36 (MQ=255) ggagAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCatta < 1:3507479/55‑1 (MQ=255) aaTCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCattatt < 1:1705556/53‑1 (MQ=255) aaTCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCattatt < 1:2368168/53‑1 (MQ=255) aTCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTAttt > 1:4394868/1‑53 (MQ=255) aTCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCtcttc < 1:2934646/66‑1 (MQ=255) aTCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTATTCGc > 1:2741035/1‑71 (MQ=255) tCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTAttt > 1:3481408/1‑52 (MQ=255) tgtgGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCt > 1:3824098/1‑69 (MQ=255) tgGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCtcttct < 1:388690/62‑1 (MQ=255) ggCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTAc > 1:1206040/1‑70 (MQ=255) gCAGGAACCGCCTCTGGTATAGGGGGAGGTGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTAcc < 1:4366761/70‑1 (MQ=255) cAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGt < 1:1378878/66‑1 (MQ=255) aGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCattat > 1:4595765/1‑42 (MQ=255) ggAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCatt < 1:3875831/39‑1 (MQ=255) gAACCGCCTCTGGTATAGGGagaggaaataatgctatcttcgcctcccc > 1:4587533‑M1/1‑20 (MQ=255) gAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCa > 1:1967639/1‑67 (MQ=255) aCCGCCTCTGGTATAGGGagaggaaataatgctatcttcgcc < 1:4562961‑M1/42‑25 (MQ=255) aCCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTcccta > 1:1326064‑M2/1‑45 (MQ=255) aCCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAAc > 1:2308609/1‑71 (MQ=255) aCCGCCTCTGGTATAGGGGGAGG‑‑‑AGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCgg > 1:4187129/1‑71 (MQ=255) ccGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAAcc < 1:2353533/71‑1 (MQ=255) cGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCg < 1:482916/71‑1 (MQ=255) gCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTc > 1:1634081/1‑38 (MQ=255) ccTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTcttctt < 1:1801853/51‑1 (MQ=255) tctGGTATAGGGGGAGTCGAAGATAGCATTATTTCCTCTCCCtcttct < 1:351069/48‑1 (MQ=255) tctGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCAc > 1:1272702/1‑71 (MQ=255) ctGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCACTCTTCTTCGCTGTACCAGATAACCGGCAc > 1:583967/1‑70 (MQ=255) tGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCa > 1:2638146/1‑71 (MQ=255) gTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTccctataccagaggcggttcctgccacagattctcc < 1:2602076‑M2/71‑37 (MQ=255) tataGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCAtt > 1:3535320/1‑70 (MQ=255) tataGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTa < 1:1800527/71‑1 (MQ=255) taGGGagaggaaataatgctatcttcgcctccccctataccagaggcggt > 1:1326064‑M1/1‑5 (MQ=255) gggggAGGCGAAGATATCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAAtt < 1:1174091/70‑1 (MQ=255) gggggAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAAttt < 1:2104746/71‑1 (MQ=255) gggagaggaaataatgctatcttcgcctccccctataccagaggcggttcctgccacagattctccctcc > 1:2571735‑M1/1‑3 (MQ=255) ggggAGGCGAAGATAGCATTATTTCCTCTccctataccagaggcggttc > 1:4587533‑M2/1‑29 (MQ=255) gggAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTtat < 1:58676/71‑1 (MQ=255) | TTGCGGTGTTTTGAATGTTAAGACTGTGGGAGGGAGAATCTGTGGCAGGAACCGCCTCTGGTATAGGGGGAGGCGAAGATAGCATTATTTCCTCTCCCTCTTCTTCGCTGTACCAGATAACCGGCACCATTAATTTAT > W3110S.gb/4366185‑4366322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |