| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 15 (0.300) | 26 (0.760) | 22/70 | NT | 75.0% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 7 (0.200) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCT > W3110S.gb/1211128‑1211266 | tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt > 1:915811/1‑71 (MQ=255) gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGtt < 1:904277‑M2/4‑1 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttttt > 1:3925584/1‑69 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaa < 1:701229‑M2/10‑1 (MQ=255) ccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 1:1841981‑M2/13‑1 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaa > 1:3731748‑M2/57‑66 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag < 1:3371156/71‑1 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga < 1:2483918/69‑1 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga < 1:1074324/71‑1 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGaaa < 1:503482/71‑1 (MQ=255) tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 1:3433901‑M2/21‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa < 1:1077127‑M2/22‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa < 1:272418‑M2/22‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa < 1:3145990‑M2/22‑1 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa < 1:3026711‑M2/22‑1 (MQ=255) aatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc > 1:2366099‑M2/47‑70 (MQ=255) atgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGttt < 1:958005‑M2/5‑1 (MQ=255) atgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc < 1:3743408‑M2/24‑1 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg < 1:3966803‑M2/27‑1 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg > 1:1487326‑M2/44‑70 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa < 1:17067/71‑1 (MQ=255) cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAt < 1:507361‑M2/32‑1 (MQ=255) cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg > 1:2976591/1‑70 (MQ=255) tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAA‑AAGCAAAt > 1:630491‑M2/36‑66 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGa < 1:4441848‑M2/9‑1 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt > 1:2456622‑M2/33‑45 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:2419899‑M2/32‑71 (MQ=255) cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 1:843296‑M2/31‑71 (MQ=255) cAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa > 1:2157128/1‑46 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:1803810‑M2/30‑71 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATg < 1:4042684‑M2/14‑1 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag < 1:3198596‑M2/17‑1 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc > 1:1735553‑M2/28‑51 (MQ=255) gagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa > 1:667623‑M2/27‑52 (MQ=255) gagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:3904032‑M2/27‑70 (MQ=255) gagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 1:134785‑M2/44‑1 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:523799‑M2/46‑1 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:2210159‑M2/49‑1 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:3532704‑M2/49‑1 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:3547324‑M2/22‑70 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:2708326‑M2/22‑70 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:1564835/1‑63 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:3382553/70‑1 (MQ=255) gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCa < 1:4304446/48‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:1860723‑M2/53‑1 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:3348308‑M2/18‑65 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc > 1:1861870/1‑69 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg < 1:2836753‑M2/55‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATCAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc < 1:4104522‑M2/52‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 1:1875024‑M2/21‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:4217760‑M2/16‑55 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg > 1:3905850‑M2/16‑71 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 1:3048449‑M2/15‑65 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:4252150‑M2/40‑1 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:538571‑M2/14‑49 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa > 1:3937199‑M2/14‑67 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa > 1:2049077‑M2/13‑38 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:4514445‑M2/13‑54 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:948608‑M2/53‑1 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg > 1:3800841‑M2/13‑70 (MQ=255) tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:2721306‑M2/46‑1 (MQ=255) tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa > 1:3009756‑M2/12‑71 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:4458437‑M2/59‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:3478793‑M2/10‑71 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGc < 1:2386575‑M2/28‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt < 1:1439251‑M2/63‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:4280436‑M2/9‑70 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:41606‑M2/8‑70 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa > 1:3302697‑M2/7‑71 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:2733998‑M2/68‑1 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:3568417‑M2/68‑1 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt > 1:773868/1‑71 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt < 1:3216310/71‑1 (MQ=255) | TGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCT > W3110S.gb/1211128‑1211266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |