| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 4 (0.080) | 29 (0.620) | 24/96 | NT | 88.5% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
TGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT > W3110S.gb/2519656‑2519788 | tgCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCAt > 1:3951635/1‑69 (MQ=255)tgCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCAt > 1:2469394/1‑69 (MQ=255) cTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgc > 1:2698460/1‑71 (MQ=255) aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAg > 1:796474/1‑71 (MQ=255) aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAg > 1:4001404/1‑71 (MQ=255) aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAg < 1:2617529/71‑1 (MQ=255) cagcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAg > 1:3853837/1‑54 (MQ=255) ggTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 1:1823715/1‑70 (MQ=255) gTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:3168420/69‑1 (MQ=255) gCTGTAAGACCATACATAAAAAAGCCGCGGATAATTCCCATAAGCGCTAACTTAAg > 1:3583973/1‑56 (MQ=255) ccATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:4354733/71‑1 (MQ=255) catacat‑aAAAAGCCGGGGATAATTCCCATAAGCGCTAACt < 1:3951342/41‑1 (MQ=25) tacttaAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgttg < 1:3939869/52‑3 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:1612950/70‑1 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:3134738/71‑1 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTa < 1:2375311/38‑1 (MQ=255) aaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg > 1:1379932/1‑71 (MQ=255) cGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:3923629/71‑1 (MQ=39) ggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:1993320/1‑71 (MQ=39) gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:846908/51‑1 (MQ=255) gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:1003062/1‑70 (MQ=40) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat < 1:3061340/47‑1 (MQ=255) tAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:4053648/70‑1 (MQ=37) aaTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 1:4131442/1‑37 (MQ=40) aaTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct > 1:4246904/1‑71 (MQ=34) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt < 1:3355085/66‑1 (MQ=33) ttCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGatat < 1:3736110/45‑1 (MQ=32) ttCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc > 1:2835178/1‑53 (MQ=31) ttCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct > 1:4157557/1‑71 (MQ=31) | TGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT > W3110S.gb/2519656‑2519788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |