| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3389452 = | 49 (0.980) | 3 (0.060) | 3/98 | NT | 5.5% | coding (78/930 nt) | aaeR | predicted DNA‑binding transcriptional regulator, efflux system |
| ? | W3110S.gb | 3389477 = | 57 (1.190) | coding (103/930 nt) | aaeR | predicted DNA‑binding transcriptional regulator, efflux system | |||||
AAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCC > W3110S.gb/3389409‑3389546 | acagctttacctgcaactcatcttccagttttgataccgtctgACTGATGAGCGTTTCGTCCAtcagtcag > 1:2920044‑M1/44‑71 (MQ=255) agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGa < 1:1275869/71‑1 (MQ=255) agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGa > 1:4300757/1‑71 (MQ=255) agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGa > 1:1380860/1‑71 (MQ=255) gAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTAt > 1:2332536/1‑70 (MQ=255) gAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTAt > 1:636236/1‑70 (MQ=255) aTTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCAtcagtca > 1:371040/1‑60 (MQ=255) aTTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaa < 1:4059723/71‑1 (MQ=255) tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaa < 1:2236236/71‑1 (MQ=255) ttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa > 1:731059/1‑71 (MQ=255) tGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa < 1:3529874/70‑1 (MQ=255) gCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaa < 1:3883502/66‑1 (MQ=255) ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTa > 1:2958386/1‑59 (MQ=255) ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTgg > 1:2597301/1‑69 (MQ=255) ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTgg > 1:209406/1‑69 (MQ=255) ttttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTgg > 1:3644877/1‑68 (MQ=255) ttttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGa < 1:1145344/69‑1 (MQ=255) ttttACCGCCGCCGCCAGACAGATACAGATGAGCGTTTCGTCCATCAGTCAGACGGTAt > 1:2618059/1‑59 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGt > 1:3929344/1‑55 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa > 1:734378/1‑62 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGaa < 1:1276399/68‑1 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGAt > 1:3830264/1‑71 (MQ=255) tACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGAt > 1:3726894/1‑70 (MQ=255) cgccgccgcCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGa < 1:1168497/66‑1 (MQ=255) ccgccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg < 1:3254776/71‑1 (MQ=255) cgccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg > 1:1489894/1‑70 (MQ=255) cgccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg > 1:1770265/1‑70 (MQ=255) gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa > 1:3078695/1‑54 (MQ=255) gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg > 1:196906/1‑69 (MQ=255) gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCa < 1:2629948/71‑1 (MQ=255) ccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAg > 1:4471232/1‑71 (MQ=255) cgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaa < 1:1282276/51‑1 (MQ=255) ccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGt > 1:2889197/1‑70 (MQ=255) cAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTa < 1:395263/70‑1 (MQ=255) gACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAg > 1:2602676/1‑71 (MQ=255) gACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAg > 1:2269371/1‑71 (MQ=255) aCAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAg > 1:1972848/1‑70 (MQ=255) aGCTACAGATGTGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTaa < 1:398332/66‑1 (MQ=255) ctgactgatggacgaaacgctcatcagtCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGt > 1:2920044‑M2/29‑71 (MQ=255) cTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGtt < 1:1184619/71‑1 (MQ=255) ACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGa < 1:3549271‑M1/45‑1 (MQ=255) CAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGa < 1:749071‑M1/47‑1 (MQ=255) CAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTaaa > 1:1730816‑M1/1‑71 (MQ=255) CAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTaaa < 1:584659‑M1/71‑1 (MQ=255) CAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTaa > 1:1925229‑M1/1‑70 (MQ=255) CAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTa > 1:3236625‑M1/1‑69 (MQ=255) aGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATg < 1:1135468/48‑1 (MQ=255) aGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTa < 1:3511682/59‑1 (MQ=255) aGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTaaa > 1:476742/1‑70 (MQ=255) aGATGAGCGTTTCGTACATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTATAGCTGTTaa < 1:3272564/69‑1 (MQ=255) aTGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAg < 1:3640884/48‑1 (MQ=255) aTGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCt < 1:844620/62‑1 (MQ=255) aTGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCg < 1:3201114/71‑1 (MQ=255) aTGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCg > 1:1902678/1‑71 (MQ=255) aTGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCg < 1:1891287/71‑1 (MQ=255) tGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAg < 1:2453723/47‑1 (MQ=255) tGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCg > 1:3381263/1‑70 (MQ=255) tGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGt < 1:2645794/71‑1 (MQ=255) ggacgaaacgctcatctgtCAGACGGTATCAAAACTGGAAGATGAGTTg < 1:4184120‑M2/30‑1 (MQ=255) gAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTTGAAGATGAGTTGCa < 1:4489274/51‑1 (MQ=255) gAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTaaa > 1:3180099/1‑66 (MQ=255) aGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAg < 1:3225335/71‑1 (MQ=255) gCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGc < 1:1180923/71‑1 (MQ=255) acgaaacgctcatctgtCAGACGGTATCAAAACTGGAAGATGAGTTGCa > 1:2521101‑M2/18‑49 (MQ=255) tttCGTCCATCAGTCAGACGGTATCAAAACTGGaa < 1:1274303/35‑1 (MQ=255) tttCGTCCATCAGTCAGACGGTATCAAAACTGGaa < 1:165501/35‑1 (MQ=255) tCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACg > 1:3692132/1‑71 (MQ=255) tCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACg > 1:1468282/1‑71 (MQ=255) tCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACg > 1:2918565/1‑71 (MQ=255) cGTCCATCAGTCAGACGGTATCAAAACTGGAAGATg < 1:2873886/36‑1 (MQ=255) gTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTa < 1:1119608/55‑1 (MQ=255) cATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACgcagca < 1:4598676/71‑1 (MQ=255) cATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACgcagc < 1:458992/70‑1 (MQ=255) cATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACgca > 1:4543790/1‑68 (MQ=255) tcagtcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTaaa > 1:2528350/1‑52 (MQ=255) tcagtcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCAtt > 1:4570680/1‑71 (MQ=255) tcagtcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCAtt > 1:1667117/1‑71 (MQ=255) agtcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTaa < 1:4595668/49‑1 (MQ=255) tCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGcc > 1:4455144‑M2/2‑71 (MQ=255) | AAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCC > W3110S.gb/3389409‑3389546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |