| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 22 (1.180) | 25 (1.340) | 22/100 | NT | 50.5% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 27 (1.450) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/713885‑713954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT > W3110S.gb/2809398‑2809465 GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAC > 1:763972/1‑71 ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG > 1:1545156/1‑71 ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA < 1:424172/71‑1 CACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAA < 1:687723/71‑1 ACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAA < 1:1433719/71‑1 ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT < 1:680807/71‑1 CATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA < 1:201320/70‑1 ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTTAAATTAAT > 1:228851/1‑71 ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT < 1:1300998/71‑1 TGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATAC > 1:1539300/1‑71 CAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG > 1:1410653/1‑47 GAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA < 1:1603295/40‑1 AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA > 1:828629/1‑45 ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC < 1:66010/70‑1 TGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGG < 1:1330383/43‑1 GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT > 1:203610/1‑66 AGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT < 1:1407474/42‑1 AGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT < 1:1403474/42‑1 AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG > 1:959937/1‑37 TTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAA > 1:781518/1‑71 CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA < 1:1514885/70‑1 CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT < 1:1236105/64‑1 CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT < 1:1126334/64‑1 CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT < 1:1000296/54‑1 GGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAA > 1:1017905/1‑71 GAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAT < 1:304592/71‑1 AACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATG > 1:1693331/1‑71 ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTT > 1:890961/1‑44 CTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAA > 1:1095126/1‑70 TAACGGCTGAAATTAATGAGGTCATACCCAAATGGA > 1:38129/1‑36 TAACGGCTGAAATTAATGAGGTCATACCCAAATGGA > 1:742879/1‑36 TAACGGCTGAAATTAATGAGGTCATACCCAAATGGA > 1:1339947/1‑36 ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT < 1:450993/69‑1 ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG < 1:1248909/41‑1 GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/713885‑713954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT > W3110S.gb/2809398‑2809465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |