| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 1 (0.050) | 17 (0.970) | 16/94 | NT | 94.8% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018627‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT < 1:944673/71‑1 GATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTA < 1:1055132/71‑1 TCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGATGGTGGGATCGCCCATAAGCGCTAACTTAAG < 1:1763894/71‑1 TTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGC < 1:297003/57‑1 ATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG > 1:1179381/1‑71 ATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAG > 1:427574/1‑51 TCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCAT < 1:997915/47‑1 GCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT > 1:1397331/1‑70 GCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAT < 1:102838/70‑1 CGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTA > 1:925167/1‑71 GAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCT < 1:864957/48‑1 TACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATA > 1:955251/1‑71 TACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATA > 1:835108/1‑71 CGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT < 1:642323/71‑1 GGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT > 1:315582/1‑71 ATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGC > 1:1648527/1‑71 ATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTG < 1:780110/70‑1 GGAGGGTGTGATCGCCCATAAGCGCTAACTTAAGGGTT < 1:1190830/38‑1 GGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTA > 1:74306/1‑39 TCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC > 1:191068/1‑71 GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT > 1:1524437/1‑70 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:1422772/1‑71 CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTA > 1:878261/1‑65 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > 1:1427119/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAT > 1:645317/1‑58 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATG < 1:1193300/43‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:757508/1‑56 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC < 1:1294751/54‑1 AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018627‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |