| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 32 (1.720) | 23/100 | NT | 84.2% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 6 (0.320) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2412159‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT < W3110S.gb/3748807‑3748741 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT > 1:355717/1‑70AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT > 1:353141/1‑70 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA > 1:561390/1‑65 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA > 1:645442/1‑70 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT > 1:985971/1‑70 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:498069/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1602664/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1322835/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:1460328/71‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA < 1:1586886/71‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGGAGCATCACCTGTT < 1:833693/51‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT < 1:1007742/71‑1 TCAAAAACACTATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGC < 1:860982/59‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA < 1:445721/60‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:287648/1‑71 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCC > 1:1508823/1‑71 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG < 1:159219/71‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC < 1:228281/70‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT < 1:640134/37‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT < 1:303478/37‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCC < 1:459655/70‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAG > 1:1475236/1‑71 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGC < 1:1280605/44‑1 AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGT > 1:1069223/1‑56 AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCC > 1:883985/1‑53 GTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCAT < 1:22841/71‑1 GTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCA > 1:1015297/1‑70 GTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC > 1:1015951/1‑48 GTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC > 1:1420443/1‑48 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACA > 1:971157/1‑64 GTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT < 1:1001150/59‑1 TGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT > 1:1577087/1‑36 GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA > 1:1202869/1‑69 GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC > 1:1743277/1‑49 CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTT < 1:383194/71‑1 ATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA < 1:1050983/71‑1 ATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA < 1:71804/71‑1 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA < 1:1438454/70‑1 CACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT > 1:869402/1‑71 ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT < 1:1217613/70‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2412159‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT < W3110S.gb/3748807‑3748741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |