| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2855747 | 22 (1.180) | 8 (0.440) | 5/98 | NT | 32.3% | intergenic (‑285/‑2) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| ? | W3110S.gb | 4124505 = | 12 (0.660) | coding (1/837 nt) | dam | DNA adenine methylase | |||||
CGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2855677‑2855747‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124505‑4124573 CGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCC < 1:1635739/71‑1 AAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCC < 1:731395/46‑1 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGTCAGGGGGCAAGT < 1:912429/71‑1 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:1076216/1‑59 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG > 1:1066177/1‑55 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:912522/1‑54 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:1644684/39‑1 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:363634/39‑1 GGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:1193095/71‑1 ACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:916397/66‑1 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:1636251/1‑71 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:365212/1‑71 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:737943/1‑71 CCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG < 1:1682779/71‑1 CGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2855677‑2855747‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124505‑4124573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |