| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 21 (1.130) | 30 (2.070) +CGCGTACAACT |
23/78 | NT | 66.4% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 18 (0.970) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
CCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTT > W3110S.gb/69997‑70131 | aacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaa < 1:910327‑M1/6‑1 (MQ=255)aacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaa < 1:20539‑M1/6‑1 (MQ=255)aacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaa < 1:897417‑M1/5‑1 (MQ=255) acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:1336043‑M1/64‑71 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaa > 1:1028268‑M1/63‑71 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaa > 1:1564317‑M1/63‑71 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaa > 1:652023‑M1/63‑71 (MQ=255) atctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAAc < 1:633585‑M1/11‑1 (MQ=255) aGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:1408638/1‑70 (MQ=255) aGCTCGCACAGAATAACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAAc > 1:1394737/1‑71 (MQ=255) tggcgtgtaattgcagtgctcatagcggtcatttatgtcagtcttgagttgtacgcgTCCAAAAAAACggg < 1:1495342‑M1/14‑1 (MQ=255) tggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg < 1:1501560‑M1/14‑1 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:1010728‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa > 1:1536998‑M1/56‑71 (MQ=255) gCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccat > 1:754137/1‑56 (MQ=255) gCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccat > 1:254748/1‑56 (MQ=255) caGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACggg < 1:345295/66‑1 (MQ=255) gtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATg < 1:711636‑M1/18‑1 (MQ=255) gtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATg < 1:1129729‑M1/18‑1 (MQ=255) gAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATg > 1:388953/1‑68 (MQ=255) aaTCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaa > 1:1100374/1‑55 (MQ=255) aaTCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgag > 1:500596/1‑70 (MQ=255) acACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa > 1:1745008/2‑71 (MQ=255) cACTGCCAAAATCGAGGCCAATTGCAATCTCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa > 1:629948/1‑70 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGaaa < 1:853520‑M1/24‑1 (MQ=255) gtgctcatagcggtcatttatgtcagagttgagttgtacgcgTCCAAAAATACGGGTATGGAGAAACAGTa > 1:9723‑M1/43‑71 (MQ=255) gCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAg > 1:1501983/1‑69 (MQ=255) gctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTa < 1:715029‑M1/29‑1 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATg > 1:1110531‑M1/40‑57 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTaga > 1:520793‑M1/40‑70 (MQ=255) aaaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTa > 1:1449132/1‑68 (MQ=255) tcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGgag > 1:802142‑M1/39‑59 (MQ=255) aaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:1126034/60‑1 (MQ=255) atagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaa < 1:901474‑M1/9‑1 (MQ=255) aTCGAGGCCAATTGCAATCGCCATCGTTTCACtccatc > 1:812090/1‑38 (MQ=255) tCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGt > 1:701002/1‑50 (MQ=255) tCGAGGCCAAATGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGtt > 1:283219/1‑71 (MQ=255) agcggtaatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTa < 1:1791‑M1/29‑1 (MQ=255) aGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCg < 1:1384098/71‑1 (MQ=255) cAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:762765/50‑1 (MQ=255) cAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:828077/50‑1 (MQ=255) cAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:922888/50‑1 (MQ=255) atttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaa < 1:1351917‑M1/43‑1 (MQ=255) aTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:927276/58‑1 (MQ=255) aTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa > 1:1056162/1‑70 (MQ=255) ttatgtcagacttgagttgtacgcgTCCAAAAAAACgg > 1:1748306‑M1/26‑38 (MQ=255) ttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGaaa > 1:892359‑M1/26‑49 (MQ=255) ttGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa > 1:156615/1‑49 (MQ=255) atgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg > 1:1024209‑M1/24‑70 (MQ=255) atgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg > 1:1317186‑M1/24‑70 (MQ=255) tcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc < 1:1616605‑M1/48‑1 (MQ=255) agacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:1618172‑M1/19‑52 (MQ=255) gacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:1356294‑M1/54‑1 (MQ=255) gacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:327233‑M1/54‑1 (MQ=255) ttgagttgtacgcgTCCAAAAAAACGGGTATGGAGaa > 1:262456‑M1/15‑37 (MQ=255) ttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTagag > 1:878633‑M1/15‑46 (MQ=255) aTCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg > 1:455932/1‑71 (MQ=255) tgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg < 1:256149‑M1/57‑1 (MQ=255) gagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg > 1:1060315‑M1/13‑70 (MQ=255) gttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc > 1:1529251‑M1/11‑71 (MQ=255) tccatccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa > 1:1178434/1‑71 (MQ=255) cgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATc < 1:1591898‑M1/69‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt < 1:811969/71‑1 (MQ=255) | CCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTT > W3110S.gb/69997‑70131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |