| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 13 (0.700) | 14 (1.110) | 10/68 | NT | 68.6% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 4 (0.320) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTT > W3110S.gb/1209300‑1209427 | tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg < 1:670759‑M1/4‑1 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGtt > 1:238931/1‑71 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt > 1:1020004‑M1/63‑69 (MQ=255) atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg > 1:1115692‑M1/62‑71 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga > 1:1020563‑M1/59‑71 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:1166762‑M1/59‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgaga < 1:1124108/71‑1 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:500906‑M1/58‑69 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:214568/71‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:252495‑M1/6‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:685796‑M1/6‑1 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:1761267‑M1/44‑59 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTg < 1:1515464/45‑1 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:1213778‑M1/23‑1 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:1655600‑M1/23‑1 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGttt > 1:379773/1‑44 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGtt > 1:1638826/1‑43 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:831357‑M1/37‑70 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa < 1:263927‑M1/17‑1 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa < 1:806948‑M1/17‑1 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:1610126‑M1/32‑43 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:1069173‑M1/40‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTg < 1:1496944‑M1/8‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:725186‑M1/42‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:993668‑M1/42‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAg > 1:196763/1‑44 (MQ=255) tGGCACTGAGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:85600/1‑56 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAg > 1:369763/1‑45 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:1150095/71‑1 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:1558831‑M1/25‑70 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:1305338‑M1/45‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:928056‑M1/24‑71 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:579030‑M1/48‑1 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:419189‑M1/50‑1 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:1544253‑M1/50‑1 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa > 1:173714/1‑43 (MQ=255) ttcttcattttcattaacgTTGGTTTGGGAGAAGGAGCAAAACTcat > 1:764796‑M1/20‑46 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:332924/43‑1 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:1652025/1‑71 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:573019/1‑54 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:1564668‑M1/7‑67 (MQ=255) | TTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTT > W3110S.gb/1209300‑1209427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |