| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 2 (0.110) | 12 (0.670) | 10/96 | NT | 86.2% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
GTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGG > W3110S.gb/2018519‑2018652 | gcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCAt > 1:1648527‑M1/53‑71 (MQ=255) cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCAt < 1:780110‑M1/19‑1 (MQ=255) acgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATcc > 1:315582‑M1/51‑71 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcg < 1:642323‑M1/26‑1 (MQ=255) gatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact < 1:207660‑M1/70‑14 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:955251‑M1/40‑71 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:835108‑M1/40‑71 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagc > 1:1428831‑M1/1‑51 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagc > 1:596892‑M1/1‑51 (MQ=255) cgcTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaac > 1:1763179‑M1/1‑46 (MQ=255) taataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccg > 1:925167‑M1/31‑71 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaag > 1:1441736‑M1/1‑42 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataa > 1:774261‑M1/1‑42 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgc > 1:1397331‑M1/29‑70 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgc < 1:102838‑M1/42‑1 (MQ=255) cTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg < 1:458490‑M1/71‑32 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:363174‑M1/1‑39 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta < 1:1739900‑M1/49‑11 (MQ=255) ttAAGTTTGAATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta < 1:732563‑M1/49‑11 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGAt > 1:1179381‑M1/26‑71 (MQ=255) aacccttaagttagcgcttatGGGCGATCACACCCTcc < 1:1190830‑M1/17‑1 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagtgttgaaccatctgaag < 1:1542521‑M1/65‑35 (MQ=255) cttaagttagcgcttatGGGCGATCCCACCATCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGa < 1:1763894‑M1/54‑1 (MQ=255) aTGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaac > 1:447864‑M1/1‑29 (MQ=255) tggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:1686541‑M1/1‑28 (MQ=255) taagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtc < 1:1055132‑M1/56‑1 (MQ=255) aagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtct < 1:944673‑M1/57‑1 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtctc < 1:864957‑M1/39‑1 (MQ=255) gcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa < 1:297003‑M1/49‑1 (MQ=255) cttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGAt > 1:427574‑M1/6‑51 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa < 1:997915‑M1/45‑1 (MQ=255) cccACCCTCCATCCTGGCGGCTGTAAAGTCTccgccg > 1:902774/1‑37 (MQ=255) cccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCg > 1:565643/1‑71 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:881493‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:714250‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc < 1:1639826‑M1/71‑70 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgc > 1:924404‑M1/1‑2 (MQ=255) | GTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGG > W3110S.gb/2018519‑2018652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |