| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 10 (0.540) | 25 (1.430) +TCA |
19/94 | NT | 84.2% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 | aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAacac > 1:1103296/1‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:62012‑M2/67‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:619011‑M2/67‑70 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:1745147‑M2/70‑2 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:1601826‑M2/66‑69 (MQ=255) gtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc > 1:1582296‑M2/65‑71 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:550619‑M2/8‑2 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCt < 1:1758933‑M2/8‑1 (MQ=255) acacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat > 1:1358797‑M2/1‑67 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCACAGAAGTGTACGAACACtgatc < 1:299774‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:985900‑M2/10‑4 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:1286761‑M2/11‑1 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:1526379‑M2/1‑62 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1712734‑M2/59‑69 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:1769293‑M2/58‑69 (MQ=255) aatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtggttaggatcACACATCTTTAGAGcc < 1:545776‑M2/16‑1 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa > 1:1567344‑M2/55‑71 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:1652805‑M2/54‑71 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag < 1:706474‑M2/70‑14 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1382530‑M2/69‑17 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:22249‑M2/58‑6 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:536981‑M2/50‑60 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:10900‑M2/21‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1290378‑M2/1‑52 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:118268‑M2/24‑1 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1050352‑M2/1‑50 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:820621‑M2/1‑50 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:1439654‑M2/1‑50 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:641666‑M2/1‑50 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:520730‑M2/46‑68 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:320392‑M2/64‑17 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacacagcaatagtgga < 1:1717122‑M2/71‑24 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca < 1:362608‑M2/5‑1 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1661977‑M2/1‑47 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccaagcaatagtggacacgcgg < 1:127150‑M2/71‑31 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:151926‑M2/45‑5 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc < 1:1447732‑M2/71‑32 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:885253‑M2/37‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:674905‑M2/37‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:1275515‑M2/37‑71 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:697540‑M2/1‑38 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCACGAGAGATgaagcc > 1:643401‑M2/35‑71 (MQ=255) taggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:1631117‑M2/33‑70 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:443665‑M2/1‑36 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:701524‑M2/1‑35 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:325361‑M2/1‑35 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:1540849‑M2/32‑65 (MQ=255) ggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaag < 1:663859‑M2/41‑1 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagc > 1:164111‑M2/30‑71 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1572342‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:347670‑M2/70‑41 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:1066753‑M2/70‑41 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg < 1:1499280‑M2/20‑1 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg < 1:1720132‑M2/20‑1 (MQ=255) gtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:584907‑M2/24‑71 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:1042327‑M2/21‑50 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:573921‑M2/33‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:1088513‑M2/33‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:1150925‑M2/17‑46 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:1642900‑M2/17‑51 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:752438‑M2/1‑20 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:1321324‑M2/56‑1 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:300179‑M2/1‑17 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:685726‑M2/56‑1 (MQ=255) gggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa > 1:1565609‑M2/11‑71 (MQ=255) gggtaggatcACACATCTTTAGAGACATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa > 1:1313285‑M2/11‑71 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:390558‑M2/48‑35 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt < 1:1681918‑M2/62‑1 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:653005‑M2/1‑13 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:322801‑M2/70‑59 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtt < 1:316571‑M2/63‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:1417267‑M2/67‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:169777‑M2/63‑57 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:670450‑M2/67‑1 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt > 1:568653‑M2/3‑64 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac > 1:1394343‑M2/1‑6 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:881956‑M2/2‑70 (MQ=255) tcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:1422967‑M2/2‑4 (MQ=255) tcactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca < 1:684323‑M2/69‑67 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:220365‑M2/1‑4 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:1617970‑M2/1‑66 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc < 1:953967/71‑1 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc < 1:271092/71‑1 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:681755‑M2/71‑70 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:855444‑M2/71‑70 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:435104/1‑70 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:624987‑M2/68‑68 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:324062‑M2/44‑44 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaag < 1:1279461‑M2/36‑36 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:1312334/1‑69 (MQ=255) | AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |