New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3748799 =	4 (0.210)	16 (0.860)	14/100	NT	80.0%	coding (184/984 nt)	tnaB	tryptophan transporter of low affinity
	?	W3110S.gb	4056222 =	NA (NA)					intergenic (‑564/+15)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'

ACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC  >  W3110S.gb/4056153‑4056285                                                                      |                                                                aCTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCgg                                                                >  1:315216/1‑71 (MQ=255)   tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCg                                                                 <  1:420434/68‑1 (MQ=255)    aaaCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTaa                                                             >  1:1652681/1‑71 (MQ=255)     aaCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAAt                                                            <  1:637544/71‑1 (MQ=255)        gAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGAc                                                         <  1:1130283/71‑1 (MQ=255)             gAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCaa                                                    >  1:510358/1‑71 (MQ=255)                   atTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTAt                                               <  1:630362/70‑1 (MQ=255)                    ttttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTAtt                                              >  1:1601720/1‑70 (MQ=255)                    ttttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTAtt                                              <  1:1622419/70‑1 (MQ=255)                    ttttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTAtt                                              <  1:658851/70‑1 (MQ=255)                      ttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGa                                            <  1:530623/70‑1 (MQ=255)                       tCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCg                                                                 >  1:136747/1‑48 (MQ=255)                               aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                  >  1:338550/1‑71 (MQ=255)                                atatTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                 >  1:409478/1‑71 (MQ=255)                                         ctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                  >  1:1658741/1‑61 (MQ=255)                                          tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                              <  1:1479095/64‑1 (MQ=255)                                          tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                         <  1:1291940/69‑1 (MQ=255)                                            aTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                            >  1:510220/1‑64 (MQ=255)                                            aTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                        <  1:1001446/68‑1 (MQ=255)                                             tttCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTAtt                                              <  1:1030842/45‑1 (MQ=255)                                              ttCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGttt                                    <  1:1728699/54‑1 (MQ=255)                                               tCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                           >  1:1676412/1‑46 (MQ=255)                                               tCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                  >  1:744773/1‑71 (MQ=255)                                                cAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                  >  1:98673/1‑70 (MQ=255)                                                   aaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt               >  1:1491534/1‑70 (MQ=255)                                                   aaaaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt               >  1:1128430/1‑70 (MQ=255)                                                     aaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc            >  1:268773/1‑71 (MQ=255)                                                          aCTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt       >  1:951735/1‑71 (MQ=255)                                                            ttttAATGTCGGTAATGACTCCAACTTATTGATAGTGttt                                    <  1:1569707/40‑1 (MQ=255)                                                              ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg   >  1:465917/1‑71 (MQ=35)                                                                aaTGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc  <  1:1395141/70‑1 (MQ=33)                                                                      |                                                                ACTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC  >  W3110S.gb/4056153‑4056285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.