Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 47,858 G→A 64.0% S30S (TCG→TCA kefC → potassium:proton antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb47,8580GA64.0% 17.0 / 23.3 25S30S (TCG→TCAkefCpotassium:proton antiporter
Reads supporting (aligned to +/- strand):  ref base G (3/6);  new base A (6/10);  total (9/16)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01

ATTTATCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCG  >  W3110S.gb/47799‑47919
                                                           |                                                             
aTTTATCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTa                                                    <  1:1662495/71‑1 (MQ=255)
         ggTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGCGATCAGTACTTGGCTACCTGATc                                             <  1:446536/69‑1 (MQ=255)
          gTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGcc                                          <  1:302987/71‑1 (MQ=255)
                    gcTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCACCGGCTGCatta                                <  1:736355/71‑1 (MQ=255)
                      tGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCattatt                              >  1:1545180/1‑71 (MQ=255)
                       gATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTAc                                                           <  1:676235/41‑1 (MQ=255)
                        aTTGTACCCATTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGcc                                          >  1:968820/1‑57 (MQ=255)
                        aTTGTACCCATTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTg                             <  1:1480010/70‑1 (MQ=255)
                          tGTACCCATTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGcc                          >  1:287570/1‑71 (MQ=255)
                            tACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCg                        <  1:1251536/71‑1 (MQ=255)
                            tACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCg                        <  1:490828/71‑1 (MQ=255)
                              cccATTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGccc                         <  1:168341/68‑1 (MQ=255)
                               ccATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTgg                     >  1:977467/1‑71 (MQ=255)
                                 aTTGCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCg                                         <  1:694908/49‑1 (MQ=255)
                                    gCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGc                 <  1:552722/70‑1 (MQ=255)
                                    gCGGTACGTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCt                >  1:1400790/1‑71 (MQ=255)
                                           gTCTTGGTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCat                                  <  1:839134/46‑1 (MQ=255)
                                            tCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGa            >  1:626610/1‑67 (MQ=255)
                                                ggTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTg      <  1:15632/69‑1 (MQ=255)
                                                ggTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGAc    >  1:1633907/1‑71 (MQ=255)
                                                ggTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGa     >  1:192992/1‑70 (MQ=255)
                                                 gTCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGAc           >  1:274201/1‑63 (MQ=255)
                                                  tCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCg  <  1:1121459/71‑1 (MQ=255)
                                                  tCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCt                <  1:660856/57‑1 (MQ=255)
                                                  tCTGGGATCAGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCg  <  1:1617151/71‑1 (MQ=255)
                                                           |                                                             
ATTTATCTCGGTTCGGCAGCGCTGATTGTACCCATTGCGGTACGTCTTGGTCTGGGATCGGTACTTGGCTACCTGATCGCCGGCTGCATTATTGGCCCGTGGGGGCTGCGACTGGTGACCG  >  W3110S.gb/47799‑47919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: