Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 3,806,473 G→A 47.1% P198P (CCG→CCA yicI → predicted alpha‑glucosidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,806,4730GA47.1% ‑1.4 / 20.1 17P198P (CCG→CCAyicIpredicted alpha‑glucosidase
Reads supporting (aligned to +/- strand):  ref base G (3/6);  new base A (3/5);  total (6/11)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGACGGTAGAGACCTGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACATGACTAACCGTGGTTATGGGGTACTGGTCAATCATCCCCAGTGTGTCTCTTTTGAAG  >  W3110S.gb/3806408‑3806537
                                                                 |                                                                
cAGACGGTAGAGACCTGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCATTCTa                                                             <  1:835062/71‑1 (MQ=255)
cAGACGGTAGAGACCTGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCATTCTa                                                             >  1:508910/1‑71 (MQ=255)
   aCGGTAGAGACCTGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACAt                                                          >  1:876847/1‑71 (MQ=255)
       tAGAGACCTGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACATGACt                                                      <  1:1623444/71‑1 (MQ=255)
          agaCCTGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACATGACTAAc                                                   <  1:1015016/71‑1 (MQ=255)
               tGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCATTCt                                                              <  1:563897/55‑1 (MQ=255)
                ggAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACATGACTAACCGTGGt                                             >  1:641067/1‑71 (MQ=255)
                         aCGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACATGACTAACCGTGGTTATGGGGTa                                    <  1:1489429/71‑1 (MQ=255)
                               gcACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACATGACTAACCGTGGTTATGGGGTACTGGTc                              <  1:493051/71‑1 (MQ=255)
                               gcACAAGTACTGAACAGGCGTATAAAAATATCCCATTCTACATGACTAACCGTGGTTATGGGGTACTGGt                               >  1:475923/1‑70 (MQ=255)
                                cacaAGTACTGAACAGGCGTATAAAAATATCCCATTCTACATGACTAACCGTGGTTATGGGGTACTGGTCa                             <  1:928979/71‑1 (MQ=255)
                                 acaAGTACTGAACAGGCGTATAAAAATATCCCATTCTACATGACTAACCGTGGTTATGGGGTACTGGTCaa                            >  1:758531/1‑71 (MQ=255)
                                                   tataAAAATATCCCATTCTACATGACTAACCGTGGTTATGGGGTACTGGTCAATCATCCCCAGTGTGtctc          <  1:534096/71‑1 (MQ=255)
                                                       aaaaTATCCCGTTCTACATGACTAACCGTGGTTATGGGGTACTGGTCAATCATCCCCAGTGTGTCTCttt       <  1:7495/70‑1 (MQ=255)
                                                          atatCCCATTCTACATGACTAACCGTGGTTATGGGGTACTGGt                               <  1:226180/43‑1 (MQ=255)
                                                           tatCCCGTTCTACATGACTAACCGTGGTTATGGGGTACTGGTCAATCATCCCCAGTGTGTCTCTTTTGaa   >  1:566287/1‑70 (MQ=255)
                                                           tatCCCGTTCTACATGACTAACCGTGGTTATGGGGTACTGGTCAATCATCCCCAGTGTGTCTCTTTTGAAg  <  1:620907/71‑1 (MQ=255)
                                                                 |                                                                
CAGACGGTAGAGACCTGGAACCGGGACGGCGGCACAAGTACTGAACAGGCGTATAAAAATATCCCGTTCTACATGACTAACCGTGGTTATGGGGTACTGGTCAATCATCCCCAGTGTGTCTCTTTTGAAG  >  W3110S.gb/3806408‑3806537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: