Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 4,392,090 G→T 43.7% L655M (CTG→ATG)  yjeP ← predicted mechanosensitive channel

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb4,392,0900GT43.7% 13.2 / 12.1 16L655M (CTG→ATG) yjePpredicted mechanosensitive channel
Reads supporting (aligned to +/- strand):  ref base G (4/5);  new base T (3/4);  total (7/9)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AATCATCATGTTCCACAGCATATGGTTGGTAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCTGAGGGTGACCACCGCCAGCGCACCGCAAATGAGGATAAAG  >  W3110S.gb/4392025‑4392154
                                                                 |                                                                
aaTCATCATGTTCCACAGCATATGGTTGGTAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACAGCGGaa                                                             <  1:91146/71‑1 (MQ=255)
       atGTTCCACAGCATATGGTTGGTAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACATCGGAATCCCGGc                                                      >  1:633534/1‑71 (MQ=255)
                    tatGGTTGGTAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCt                                          >  1:1664657/1‑70 (MQ=255)
                      tggttggtAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACATCGGAATCCCGGCCTTTTTCAGGCTGa                                        <  1:801467/70‑1 (MQ=255)
                      tggttggtAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACATCGGAATCCCGGCCTTTTTCAGGCTGAg                                       <  1:1061000/71‑1 (MQ=255)
                      tggttggtAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACAGc                                                                 <  1:916284/45‑1 (MQ=255)
                      tggttggtAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCTGa                                        <  1:1478982/70‑1 (MQ=255)
                            gtAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACATCGGAATCCCGGCCTTTTTCAGGCTGa                                        <  1:1274351/64‑1 (MQ=255)
                              aaTGTTGTCGCCGCTGCCCTCTTTGTTGAGATACATCGGAATCCCGGCCTTTTTCAGGCTGAgg                                      >  1:1050650/1‑64 (MQ=255)
                               aTGTTGTCGCCGCTGCCCTCTTTGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCTGAGGGTGaccac                              >  1:1739683/1‑71 (MQ=255)
                                  ttgtCGCCGCTGCCCTCTTTGTTGAGATACATCGGaa                                                             >  1:1169376/1‑37 (MQ=255)
                                  ttgtCGCCGCTGCCCTCTTTGTTGAGATACAGAGGAATCCCGGCCTTTTTCAGGCTGa                                        >  1:1150619/1‑58 (MQ=255)
                                                  ctTTGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCTGAGGGt                                    <  1:446049/46‑1 (MQ=255)
                                                  ctTTGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCTGAGGGt                                    <  1:926276/46‑1 (MQ=255)
                                                   tttGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCTGAGGGTGACCACCGCCAGCGCACCGCAAAt            >  1:288454/1‑69 (MQ=255)
                                                           gaTACATCGGAATCCCGGCCTTTTTCAGGCTGAGGGTGACCACCGCCAGCGCACCGCAAATGAGGATaaag  <  1:1657424/71‑1 (MQ=255)
                                                                 |                                                                
AATCATCATGTTCCACAGCATATGGTTGGTAATGTTGTCGCCGCTGCCCTCTTTGTTGAGATACAGCGGAATCCCGGCCTTTTTCAGGCTGAGGGTGACCACCGCCAGCGCACCGCAAATGAGGATAAAG  >  W3110S.gb/4392025‑4392154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: