Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 70,434 C→T 62.2% N16N (AAC→AAT araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb70,4340CT62.2% 33.0 / 48.1 45N16N (AAC→AATaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base C (6/11);  new base T (10/18);  total (16/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGTATGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCG  >  W3110S.gb/70375‑70499
                                                           |                                                                 
aGTATGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggt                                                        <  1:994163/71‑1 (MQ=255)
    tGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGc                                                     >  1:1752415/1‑70 (MQ=255)
    tGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGc                                                     <  1:484476/70‑1 (MQ=255)
    tGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGCTGGCg                                                    >  1:329661/1‑71 (MQ=255)
      aaaaGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCgg                                                   <  1:1387960/70‑1 (MQ=255)
         aGTATGGCTGAAGCGCAAAATGATGCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGtt                                                >  1:1523620/1‑70 (MQ=255)
         aGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGttt                                               <  1:1739469/71‑1 (MQ=255)
                 tGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGc                                                     >  1:16364/1‑57 (MQ=255)
                   aaGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGa                                       <  1:407453/69‑1 (MQ=255)
                    aGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTg                                    <  1:141210/71‑1 (MQ=255)
                    aGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTg                                    <  1:660492/71‑1 (MQ=255)
                    aGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTg                                    <  1:288893/71‑1 (MQ=255)
                    aGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTg                                    <  1:257476/71‑1 (MQ=255)
                    aGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTg                                    <  1:1530159/71‑1 (MQ=255)
                    aGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTg                                    <  1:923435/71‑1 (MQ=255)
                        cAAAATGATCCCCTGCTGCCGGGATACTCGTTTAAc                                                                   <  1:505100/36‑1 (MQ=255)
                           aaTGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTAGGCCAAc                            >  1:205223/1‑71 (MQ=255)
                               aTCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACgg                          <  1:192261/70‑1 (MQ=255)
                                tCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGtt                        <  1:1472285/71‑1 (MQ=255)
                                tCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGtt                        <  1:1470312/71‑1 (MQ=255)
                                    ctgctgCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGttt                                               <  1:983810/44‑1 (MQ=255)
                                    ctgctgCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAAc                                            <  1:693247/47‑1 (MQ=255)
                                     tgctgcCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTAtctc                   >  1:340776/1‑71 (MQ=255)
                                      gctgcCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTaa                                             >  1:813236/1‑44 (MQ=255)
                                      gctgcCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTaa                                             >  1:438548/1‑44 (MQ=255)
                                      gctgcCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTaa                                             >  1:866810/1‑44 (MQ=255)
                                       ctgcCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGa                 >  1:1067277/1‑71 (MQ=255)
                                          ccGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAtt               <  1:1718925/70‑1 (MQ=255)
                                          ccGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAt                <  1:1055078/69‑1 (MQ=255)
                                          ccGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAttt              <  1:502269/71‑1 (MQ=255)
                                          ccGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAttt              <  1:1105016/71‑1 (MQ=255)
                                            gggATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAttttt            >  1:433771/1‑71 (MQ=255)
                                               aTACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAtttt             <  1:1122201/67‑1 (MQ=255)
                                               aTACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa         >  1:542616/1‑71 (MQ=255)
                                                tACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAtttttt           >  1:1200225/1‑68 (MQ=255)
                                                tACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGcc                                         <  1:1255632/38‑1 (MQ=255)
                                                tACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTAt        <  1:1541809/71‑1 (MQ=255)
                                                tACTCATTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTAt        <  1:486754/71‑1 (MQ=255)
                                                  cTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTATc       <  1:1436485/70‑1 (MQ=255)
                                                   tCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAttttttt          <  1:1662032/66‑1 (MQ=255)
                                                   tCGTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAttttttt          <  1:810372/66‑1 (MQ=255)
                                                     gTTTAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTATcgacc   >  1:1697340/1‑71 (MQ=255)
                                                     gTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGc                                >  1:705038/1‑42 (MQ=255)
                                                     gTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGtt                        >  1:948081/1‑50 (MQ=255)
                                                      tttAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCaa                             <  1:212586/44‑1 (MQ=255)
                                                      tttAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTATcgaccg  <  1:1588316/71‑1 (MQ=255)
                                                           |                                                                 
AGTATGAAAAGTATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCG  >  W3110S.gb/70375‑70499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: