Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 527,659 A→G 65.2% K163E (AAA→GAA)  ylbH → conserved hypothetical protein, rhs‑like

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb527,6590AG65.2% 23.0 / 17.8 23K163E (AAA→GAA) ylbHconserved hypothetical protein, rhs‑like
Reads supporting (aligned to +/- strand):  ref base A (5/3);  new base G (7/8);  total (12/11)
Fisher's exact test for biased strand distribution p-value = 6.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCC  >  W3110S.gb/527592‑527721
                                                                   |                                                              
aTTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGCTATGAAAAag                                                             <  1:1598066/71‑1 (MQ=255)
 ttttGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAagaaga                                                            <  1:338736/71‑1 (MQ=255)
        gAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAagagatta                                                       >  1:19643/1‑69 (MQ=255)
           tgtCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAGAagagattagagat                                                  >  1:798247/1‑71 (MQ=255)
             tCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATgaagaa                                                              >  1:333602/1‑57 (MQ=255)
               taaattaaatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACg                                              >  1:367046/1‑71 (MQ=255)
                 aattaaatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAGAagagattaga                                                     <  1:1617899/62‑1 (MQ=255)
                   ttaaatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAagagattagagat                                                  <  1:686583/63‑1 (MQ=255)
                      aatGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTaaa                                       >  1:466686/1‑71 (MQ=255)
                          aCGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAgagattagagatta                                                <  1:1452336/58‑1 (MQ=255)
                          aCGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAgagattagagatta                                                <  1:1589265/58‑1 (MQ=255)
                          aCGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAaga                                                            <  1:1136444/46‑1 (MQ=255)
                              tGGTGTTTGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTAAATCTGTTCg                               >  1:812278/1‑71 (MQ=255)
                               ggTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCgg                              >  1:157036/1‑71 (MQ=255)
                                   ttAGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATg                          <  1:1038763/71‑1 (MQ=255)
                                     aGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGt                             <  1:329027/66‑1 (MQ=255)
                                     aGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGt                             <  1:351745/66‑1 (MQ=255)
                                     aGCCGATCGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGt                             <  1:1093765/66‑1 (MQ=255)
                                        cGATCCGCGAAAGGGCTGGGTTATGAAAAagagattagagat                                                  >  1:1501696/1‑42 (MQ=255)
                                            cGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTaaa                                       >  1:1202528/1‑49 (MQ=255)
                                            cGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTaaa                                       >  1:64109/1‑49 (MQ=255)
                                            cGGCGAAAGGGCTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAg                  >  1:294835/1‑70 (MQ=255)
                                                   aGGGCTGGGTTATGAAAAAGAGATAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTa           >  1:1560180/1‑69 (MQ=255)
                                                       cTGGGTTATGAAGAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCt      <  1:1147014/71‑1 (MQ=255)
                                                           gTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATcc  >  1:503230/1‑71 (MQ=255)
                                                                 aaaaaGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAg             >  1:1566863/1‑54 (MQ=255)
                                                                   |                                                              
ATTTTGTCGAGTGTCTAAATTAAATGACGCTGGTGTTAGCCGATCGGCGAAAGGGCTGGGTTATGAAAAAGAGATTAGAGATTACGGGTTAAATCTGTTCGGTATGTACGGCAGAAAAGTAAAGCTATCC  >  W3110S.gb/527592‑527721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: